Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N03
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   1.2  
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901...    27   3.6  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    27   6.3  
05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570           27   6.3  

>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 225 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 332
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>01_06_1759 +
           39689410-39689573,39689728-39689923,39690014-39690103,
           39690221-39690277,39690391-39690460,39690747-39690811,
           39691408-39691462,39691704-39691831,39691919-39691950,
           39692205-39692274,39692723-39692824,39692921-39693010,
           39693084-39693232,39693620-39693731,39695332-39695412,
           39695481-39695705,39695815-39695937,39696021-39696137
          Length = 641

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 114 ALGHLRYSLTDVPPQSNSPPGSVLEP 37
           ALGH+   L + P ++  PP   ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 286 CHKPVIPVVTFLAPLAK 236
           C KP+IP  T +APL K
Sbjct: 307 CRKPIIPSGTMVAPLVK 323


>05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570
          Length = 378

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 171 DQASFCPCAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEP 37
           D+A+ C    R++     LA  HLR  L   P  S+S   + L P
Sbjct: 56  DEAALCARCDRDIHAANRLAGKHLRLPLLS-PASSSSSSAAALAP 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,852,208
Number of Sequences: 37544
Number of extensions: 216875
Number of successful extensions: 639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)