Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N03
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   0.51 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   3.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   3.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   8.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   8.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   8.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 156 CPCAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG 25
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 41  SRTLPGGE--FDWGGTSVKE*RRCPKASSARTETSRGA 148
           +  LPG    F+    SVKE RR   A  ++ +  RGA
Sbjct: 300 TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGA 337


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 41  SRTLPGGE--FDWGGTSVKE*RRCPKASSARTETSRGA 148
           +  LPG    F+    SVKE RR   A  ++ +  RGA
Sbjct: 11  TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGA 48


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
          esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 85 RCTAPVKLPAW 53
          R  AP K+PAW
Sbjct: 62 RFKAPQKIPAW 72


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 362 AEFCFQMIGRADIEGSKSNVAM 297
           +EFC + IG   I  S  N+A+
Sbjct: 149 SEFCGKNIGMKRIFTSSQNIAV 170


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 174 LDQASFCPCAPR 139
           L+Q+  CP APR
Sbjct: 206 LEQSPLCPPAPR 217


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 85 RCTAPVKLPAW 53
          R  AP K+PAW
Sbjct: 62 RFKAPQKIPAW 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,696
Number of Sequences: 438
Number of extensions: 2133
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)