Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N02
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar... 59 5e-10
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 56 4e-09
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 29 0.36
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 1.1
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 1.9
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 27 2.6
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 27 2.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 27 2.6
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 3.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.4
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 7.8
>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 390
Score = 58.8 bits (136), Expect = 5e-10
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = +3
Query: 318 RSGNPTRNTLEECLAALEGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGTNRLL 497
RSGNPTR+ L+ LA L KHA V ++G+ A I H+++ D+YGG++RLL
Sbjct: 51 RSGNPTRSVLQVHLAKLMKAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLL 110
Query: 498 RQVVSRMGIDTTFTDFTDL 554
+ G D +DL
Sbjct: 111 SFNQRQYGFKVDNVDTSDL 129
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 429
Score = 56.0 bits (129), Expect = 4e-09
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +3
Query: 318 RSGNPTRNTLEECLAALEGGKHALVFASGLGATTTIASLLSK-GDHILSSDDVYGGTNRL 494
R NPT + E+ +AALE G A+ +SG A + L+K GD+I+S+ +YGGT L
Sbjct: 59 RMMNPTADVFEKRIAALEHGAAAIATSSGTSALFMALTTLAKAGDNIVSTSYLYGGTYNL 118
Query: 495 LRQVVSRMGIDTTFTDFTD 551
+ + R+GI T F + D
Sbjct: 119 FKVTLPRLGITTKFVNGDD 137
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 185 FATQAIHAGQDPDKWDSAAVVAPIVTSTTF 274
F T +HAGQ+PD S+ V PI +T++
Sbjct: 8 FETLQLHAGQEPDAATSSRAV-PIYATTSY 36
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 29.5 bits (63), Expect = 0.36
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +3
Query: 345 LEECLAALEGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGTNRLLRQVVSRMGI 524
+EE A G ALVF+ G T+ S L ++ SD++ + R ++
Sbjct: 238 VEELTANFVGKPAALVFSQGFSTNATVFSTLMCPGSLIISDELNHTSIRFGARLSGANIR 297
Query: 525 DTTFTDFTDLEKVTK 569
D TDLE+V +
Sbjct: 298 VYKHNDMTDLERVLR 312
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 505 TCLNNLFVPPYTSSED 458
TC N L +PPYTS +D
Sbjct: 734 TCFNRLDLPPYTSKKD 749
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 339 NTLEECLAALEG--GKHALVFASGLGATTTIASLLSKGDHILSSDDVYGG---TNRLLRQ 503
N ++ A+L G ++V++SGL A + S L+ HI +GG T +++ +
Sbjct: 72 NNVDRAEASLSSVLGAPSVVYSSGLAAIYGLLSYLNP-KHIAVHKPGFGGYSGTIQIIAR 130
Query: 504 VVSRMGIDTTFTD 542
+ G++T+F D
Sbjct: 131 INRLTGLETSFID 143
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 174 GFKNPSSDILYSVNASLRSLTIQFNL-YHTTTTNQTCSP 61
GF+ P+ D+ YS+ AS + I +NL + +T N SP
Sbjct: 209 GFRIPN-DVPYSLKASFKRGNIDYNLDSYNSTNNYYSSP 246
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 468 DVYGGTNRLLRQVVSRMGIDTT 533
DVY NRL QV++ +G D T
Sbjct: 144 DVYSADNRLAEQVIASVGDDCT 165
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.6 bits (56), Expect = 2.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 505 TCLNNLFVPPYTSSED 458
TC N L +PPY S E+
Sbjct: 638 TCFNRLDIPPYNSKEE 653
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 403 PEAKTKACFPPSKAARHSSKVFLVGFPD 320
P + K+CF S ++ S +LVGF D
Sbjct: 89 PFTRVKSCFSSSSPSKFSFTQWLVGFTD 116
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 3.4
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -3
Query: 562 TFSRSVKSVNVVSIPILDTTCLNNLFVPPYTSSEDKM*SPLLSSEAIVVVAPRPEAKTKA 383
T S S+ S+N N+L V P +S S L SS + + + R E+ +++
Sbjct: 964 TLSESISSINT-----------NSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSES 1012
Query: 382 CFPPSKAARHSSKVFLV 332
S + R SS LV
Sbjct: 1013 ASTSSASKRSSSSTSLV 1029
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 7.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 345 LEECLAALEGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGTNRLLRQVVSR 515
+E CL A++ + LG T L++ +L DD+ T+R + QVV +
Sbjct: 314 VESCLDAIDSRSQS----KKLGKETPHDYLITSTKTVLEFDDIVTQTHRAISQVVKQ 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,162
Number of Sequences: 5004
Number of extensions: 40864
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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