Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N02
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0537 + 3860277-3860286,3860464-3860576,3861729-3861799,386... 76 2e-14
06_01_0527 + 3822051-3822318,3822408-3822520,3823673-3823743,382... 76 2e-14
10_07_0109 + 12952293-12952952,12953049-12953402,12953494-129538... 64 7e-11
10_07_0105 + 12922828-12923448,12923554-12923907,12924008-129243... 64 7e-11
06_01_0963 + 7411944-7412396,7412677-7412736,7412828-7413010,741... 62 2e-10
10_07_0106 - 12933918-12934041,12934164-12934486,12934584-129349... 62 4e-10
10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397 52 3e-07
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845... 48 7e-06
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 31 0.85
09_02_0068 - 3832858-3833228,3835773-3836223 30 1.5
11_01_0459 + 3546101-3548771,3548871-3549238 29 2.0
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 29 2.0
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 29 3.4
01_07_0024 - 40559423-40559863,40559959-40560192,40560546-405608... 28 6.0
11_03_0080 + 9674515-9674755,9674880-9674901,9676710-9676923,967... 27 8.0
>06_01_0537 +
3860277-3860286,3860464-3860576,3861729-3861799,
3861887-3861978,3862080-3862167,3862264-3862375,
3862503-3862599,3862710-3862791,3863153-3863273,
3863459-3863566,3863717-3863819,3863996-3864171
Length = 390
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/83 (43%), Positives = 49/83 (59%)
Frame = +3
Query: 318 RSGNPTRNTLEECLAALEGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGTNRLL 497
RSGNPTR+ L+ +A LE A F SG+ A + LL G I++ +D+YGG++RLL
Sbjct: 54 RSGNPTRDVLQSLMAKLEKADQAFCFTSGMAALAAVTHLLKSGQEIVAGEDIYGGSDRLL 113
Query: 498 RQVVSRMGIDTTFTDFTDLEKVT 566
QV R GI D T + +VT
Sbjct: 114 SQVAPRHGIVVKRIDTTKISEVT 136
>06_01_0527 +
3822051-3822318,3822408-3822520,3823673-3823743,
3823831-3823922,3824024-3824111,3824208-3824319,
3824447-3824543,3824654-3824735,3825097-3825217,
3825403-3825510,3825661-3825763,3825940-3826115
Length = 476
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/83 (43%), Positives = 49/83 (59%)
Frame = +3
Query: 318 RSGNPTRNTLEECLAALEGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGTNRLL 497
RSGNPTR+ L+ +A LE A F SG+ A + LL G I++ +D+YGG++RLL
Sbjct: 140 RSGNPTRDVLQSLMAKLEKADQAFCFTSGMAALAAVTHLLKSGQEIVAGEDIYGGSDRLL 199
Query: 498 RQVVSRMGIDTTFTDFTDLEKVT 566
QV R GI D T + +VT
Sbjct: 200 SQVAPRHGIVVKRIDTTKISEVT 222
>10_07_0109 +
12952293-12952952,12953049-12953402,12953494-12953816,
12953939-12954062
Length = 486
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 315 GRSGNPTRNTLEECLAALEGGKHALVFASGLGA-TTTIASLLSKGDHILSSDDVYGGTNR 491
GR GNPT LEE ++ALE + LV +SG+ A T+ +L+ G H++++ D Y
Sbjct: 149 GRYGNPTVKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVATADCYSEARA 208
Query: 492 LLRQVVSRMGIDTTFTDFTD 551
+R +S MGI +TF D D
Sbjct: 209 FIRDKLSNMGITSTFVDLDD 228
>10_07_0105 +
12922828-12923448,12923554-12923907,12924008-12924330,
12928324-12928401,12928760-12928883
Length = 499
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 315 GRSGNPTRNTLEECLAALEGGKHALVFASGLGA-TTTIASLLSKGDHILSSDDVYGGTNR 491
GR GNPT LEE ++ALE + LV +SG+ A T+ +L+ G H++++ D Y
Sbjct: 136 GRYGNPTVKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVATADCYSEARA 195
Query: 492 LLRQVVSRMGIDTTFTDFTD 551
+R +S MGI +TF D D
Sbjct: 196 FIRDKLSNMGITSTFVDLDD 215
>06_01_0963 +
7411944-7412396,7412677-7412736,7412828-7413010,
7413259-7413339,7414219-7414541,7414961-7415084
Length = 407
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 318 RSGNPTRNTLEECLAALEGGKHALVFASGLGA-TTTIASLLSKGDHILSSDDVYGGTNRL 494
R GNPT LE+ ++A+E + +V +SG+ A T+ +++ G H++++ D Y
Sbjct: 81 RYGNPTVEVLEDKISAMEKAEATIVTSSGMNAIVATLLAVVPPGGHVVATTDCYSEARAF 140
Query: 495 LRQVVSRMGIDTTFTDFTDLE 557
+R +S+MGI TTF D D+E
Sbjct: 141 IRDRLSKMGIRTTFVDLDDME 161
>10_07_0106 -
12933918-12934041,12934164-12934486,12934584-12934937,
12935029-12935646
Length = 472
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +3
Query: 315 GRSGNPTRNTLEECLAALEGGKHALVFASGLGA-TTTIASLLSKGDHILSSDDVYGGTNR 491
GR GNPT LEE ++ALE + LV +SG+ A T+ +L+ G H++ + D Y
Sbjct: 135 GRYGNPTVKVLEEKISALERAEATLVTSSGMNAIVATLLALVPPGGHVVVTADCYSEARA 194
Query: 492 LLRQVVSRMGIDTTFTDFTD 551
+ +S+MGI +TF D D
Sbjct: 195 FIHDKLSKMGITSTFVDLDD 214
>10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397
Length = 469
Score = 52.0 bits (119), Expect = 3e-07
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +3
Query: 318 RSGNPTRNTLEECLAALEGGKHALVFASGLGATTTIA-SLLSKGDHILSSDDVYGGTNRL 494
R NPT L +AALEG + A ASG+ A +++ L+ G H+++S +YGGT+ L
Sbjct: 101 RHFNPTVLALGRQMAALEGTEAAYCTASGMSAISSVLMQLVGAGGHVVASRCLYGGTHAL 160
Query: 495 LRQVVSR-MGIDTTFTDFTD 551
L + + R G+ TF D D
Sbjct: 161 LSRFLPRASGVRATFVDADD 180
>03_03_0129 -
14684003-14684123,14684205-14684323,14684406-14684501,
14684605-14684712,14684974-14685060,14685135-14685338,
14685429-14685488,14686096-14686264,14686400-14686473,
14686586-14686897,14687054-14687212
Length = 502
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 315 GRSGNPTRNTLEECLAALEGGKHALVFASGLGATTT-IASLLSKGDHILSSDDVYGGTNR 491
GR GNPT LE+ ++ALE + + ASG+ A+ +++L+ G H++++ D Y T
Sbjct: 167 GRYGNPTTEALEKKMSALEKAESTVFVASGMYASVAMLSALVPAGGHVVTTTDCYRKTRI 226
Query: 492 LLRQVVSRMGIDTTFTDFTDLE 557
+ + + GI T D++
Sbjct: 227 YMETELPKRGITMTVIRPADMD 248
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 30.7 bits (66), Expect = 0.85
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +3
Query: 315 GRSGNPTRNTLEECLAAL-EG---GKHALVFA---SGLGATTTIASLLSKGDHI 455
G SG P+ EEC+A L +G G +A V A +G G T T+ + +G HI
Sbjct: 56 GSSGTPSAAMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTACKEGSHI 109
>09_02_0068 - 3832858-3833228,3835773-3836223
Length = 273
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 80 LTKPAARGSTSSRAAPPRGAQLCSLV 3
+T P A+G+T+ R+APP+G S V
Sbjct: 155 VTPPEAKGNTAGRSAPPKGGAAGSAV 180
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 408 GATTTIASLLSKGDHILSSDDVYGGTNRLLRQVVSRMGIDTTFTDFTDLEKVTK 569
G IA ++GD + ++ DVY LL + R ID F D + K T+
Sbjct: 883 GTIGYIAPECAEGDQVSTASDVYSFGVVLLELFICRRPIDAMFKDGLSIAKFTE 936
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 372 GGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGT 485
GGK ++ LG T+ L K I+ +DV+ GT
Sbjct: 115 GGKRRIIIPPELGPPDTVGKALLKISSIIKIEDVFAGT 152
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 425 DCSGSSKTRGKDQSVFPALQSCEAFF*SVPSRISRS 318
+C+ K G + S F +++ EAF SVP +I +S
Sbjct: 555 NCNKVDKPVGDETSDFSSMEDLEAFLDSVPQKIEQS 590
>01_07_0024 -
40559423-40559863,40559959-40560192,40560546-40560842,
40561048-40561230,40561534-40561590,40561851-40561937
Length = 432
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 158 DGFLKPKTGFATQAIHAGQDPDKWDSAAVVAPI 256
+GF+ P G A I G+ P WD + A I
Sbjct: 344 NGFMSPNMGRAVGDIEMGRKPVAWDEPRMAADI 376
>11_03_0080 +
9674515-9674755,9674880-9674901,9676710-9676923,
9676924-9677014,9677177-9677266,9677390-9677490,
9677791-9677931
Length = 299
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +3
Query: 315 GRSGNPTRNTLE---ECLAALEGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGT 485
G +G+P LE E AA +G +V G A G I+ + DV+G
Sbjct: 24 GAAGSPRLQCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFE 83
Query: 486 NRLLRQVVSRMG 521
LLR++ ++G
Sbjct: 84 APLLRKIADKVG 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,002
Number of Sequences: 37544
Number of extensions: 295706
Number of successful extensions: 1028
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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