Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N02
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)               77   8e-15
SB_31044| Best HMM Match : Cys_Met_Meta_PP (HMM E-Value=4.7e-05)       40   0.001
SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)         31   0.66 
SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)                 31   0.66 
SB_40987| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_41005| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_49814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)                    29   3.5  
SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)          29   3.5  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   28   6.2  
SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8)                   28   6.2  
SB_1940| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)                   27   8.2  
SB_43677| Best HMM Match : K_tetra (HMM E-Value=6.4e-39)               27   8.2  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       27   8.2  
SB_42579| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_39260| Best HMM Match : DUF765 (HMM E-Value=9.6)                    27   8.2  
SB_36003| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_8768| Best HMM Match : TrmB (HMM E-Value=0.86)                      27   8.2  
SB_5754| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  

>SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 35/65 (53%), Positives = 43/65 (66%)
 Frame = +3

Query: 318 RSGNPTRNTLEECLAALEGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGTNRLL 497
           RSGNPTR   EEC+AALEGGKH +  +SGL AT  +   L  GDHI   DDVYGG + + 
Sbjct: 59  RSGNPTRTCFEECVAALEGGKHGIATSSGLAATMLLVHTLKSGDHIACIDDVYGGHSDVC 118

Query: 498 RQVVS 512
             V++
Sbjct: 119 TGVIA 123



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 29/45 (64%), Positives = 33/45 (73%)
 Frame = +2

Query: 185 FATQAIHAGQDPDKWDSAAVVAPIVTSTTFKQTAPTVHNGYEYRK 319
           F T AIHAGQ+P+KW S AVV PI  STTFKQ AP V+  YEY +
Sbjct: 15  FGTLAIHAGQEPEKWTSRAVVPPISLSTTFKQDAPGVYKQYEYSR 59


>SB_31044| Best HMM Match : Cys_Met_Meta_PP (HMM E-Value=4.7e-05)
          Length = 157

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 315 GRSGNPTRNTLEECLAALEGGKHALVFASGLGATT-TIASLLSKGDHILSSDDVY 476
           GR G  T  +L++ +  LEGG   ++F  G  A   +I + + +GDH+L ++  Y
Sbjct: 98  GRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAY 152


>SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)
          Length = 391

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 345 LEECLAALEGGKHALVFASGLGA-TTTIASLLSKGDHILSSD 467
           LE+ +A   G + A+VF  G    +T I  L+SKGD I+S +
Sbjct: 152 LEKMVARFVGKESAMVFGMGFATNSTNIPVLVSKGDLIISDE 193


>SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)
          Length = 595

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 345 LEECLAALEGGKHALVFASGLGA-TTTIASLLSKGDHILSSD 467
           LE+ +A   G + A+VF  G    +T I  L+SKGD I+S +
Sbjct: 9   LEKMVARFVGKESAMVFGMGFATNSTNIPVLVSKGDLIISDE 50


>SB_40987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 154 RHFIFC*CVSKIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
           R+F  C  +  I++ +I             PGDPLVLERP
Sbjct: 28  RNFDLCTTILLILSINIERKTEDTTSNSCSPGDPLVLERP 67


>SB_41005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 568

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = +3

Query: 333 TRNTLEECLAALEGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGTNRLLRQVVS 512
           T  T+EE +   EGG+  ++ A+  GA+T IA + +   ++++        N +L  + S
Sbjct: 401 TPETIEEAIDLPEGGERNVIEAAAKGASTAIALVANVAANLIAFLAFLAFFNAMLSWLGS 460

Query: 513 RMG 521
            +G
Sbjct: 461 MVG 463


>SB_49814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 202 NSLSRKPSFWLQKSVFRHFIFC*CVSKIVNNSIXXXXXXXXXX--XLQPGDPLVLERP 35
           N + + P+FW+    F       C+S  +N ++               PGDPLVLERP
Sbjct: 137 NLIKKIPNFWITVVSFDISCKRVCIS-CLNFAVNAQGISAVTNQLSANPGDPLVLERP 193


>SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)
          Length = 585

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 408 GATTTIASLLSKGDHILSSDDVYGGT 485
           GA+ T A LL+KG  +LS   + GGT
Sbjct: 167 GASVTTAGLLAKGGLVLSGSSMPGGT 192


>SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)
          Length = 1292

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 130  VSKIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
            V K+ N                PGDPLVLERP
Sbjct: 1153 VDKVCNGQTISLYGNVWTVLTSPGDPLVLERP 1184


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = -3

Query: 67 QPGDPLVLERP 35
          QPGDPLVLERP
Sbjct: 36 QPGDPLVLERP 46


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 390 VFASGLGATTTIASLLSKGDHILSSDDVYGGT 485
           + A GLG T    +  + GD    S+D YGGT
Sbjct: 245 IVAGGLGVTGNNVAAAAGGDGFDGSNDSYGGT 276


>SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8)
          Length = 213

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 130 VSKIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
           VS+ V++               PGDPLVLERP
Sbjct: 101 VSRCVSDVTRALVSKAESNSCSPGDPLVLERP 132


>SB_1940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 124 KIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
           ++V++ I             PGDPLVLERP
Sbjct: 55  EVVHHIISAETMVIESNSCSPGDPLVLERP 84


>SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)
          Length = 592

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 122 DR*QFNLTSTTQPPLTKPAARGSTSSRAAPPRG 24
           D+ Q +  STT+    KPA++ S SS +A P G
Sbjct: 292 DKIQIHSPSTTKADSDKPASKPSGSSSSARPSG 324


>SB_43677| Best HMM Match : K_tetra (HMM E-Value=6.4e-39)
          Length = 218

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 522 YPFLIRLVLTIYSCHRIHRPRTRCDPL 442
           +P L  ++L  Y   ++H PR  C PL
Sbjct: 64  HPDLFAIILNYYRTGKLHAPRDCCGPL 90


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 369  EGGKHALVFASGLGATTTIASLLSKGDHILSSDDVYGGTNRL 494
            + G +  V ++ LG  TT+A L  KG H     +  G  +RL
Sbjct: 4325 DSGSYRAVASNNLGEATTLAELTVKGKHFARELEEGGCHSRL 4366


>SB_42579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 172 LQKSVFRHFIFC*C-VSKIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
           LQK    +F F  C   K+    I             PGDPLVLERP
Sbjct: 14  LQKVTIDNF-FSECKFQKVTLGKIKQYTRKKRSNSCSPGDPLVLERP 59


>SB_39260| Best HMM Match : DUF765 (HMM E-Value=9.6)
          Length = 175

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 124 KIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
           ++   S+             PGDPLVLERP
Sbjct: 37  RVYRPSVEAAGGTASSNSCSPGDPLVLERP 66


>SB_36003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 154 RHFIFC*CVSKIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
           +HF      + I+N                PGDPLVLERP
Sbjct: 2   KHFTDTLISANILNKIKETRHLQAASNSCSPGDPLVLERP 41


>SB_8768| Best HMM Match : TrmB (HMM E-Value=0.86)
          Length = 480

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 133 CVSKIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
           C++  + + +             PGDPLVLERP
Sbjct: 339 CLNARLKSQVYVKGANLANIFTSPGDPLVLERP 371


>SB_5754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 127 SKIVNNSIXXXXXXXXXXXLQPGDPLVLERP 35
           S+ V + I             PGDPLVLERP
Sbjct: 15  SRAVTSHIQKKGAKEISNSCSPGDPLVLERP 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,854,092
Number of Sequences: 59808
Number of extensions: 325915
Number of successful extensions: 2491
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2491
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)