Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N01
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    28   0.92 
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   1.2  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   2.8  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   4.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   6.5  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   6.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   8.6  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   8.6  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 296 FFAMRMNTASVPSVGVQFYIVND*RQYWMVTTRWRR*NVIALVQPQWFISSF 141
           F+  RM + S     V+ Y  ND  + W +T+ WR  +  +L++  W   SF
Sbjct: 24  FYGRRMVSCSADQ-RVKVYDFNDDTETWAITSEWRAGDA-SLMRVAWAHPSF 73


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 213 PILPSIIDDIKLDPNRRYTRSIHSHREKRSLSR 311
           PILP+++D +  D N+ +   I   +EK +L++
Sbjct: 229 PILPAMLDLMSNDDNKMFVDDIVGFKEKATLNK 261


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 171 KGNDISPAPTSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSL-SRNY 317
           K ND   + +S  + + P ++   K DPN    RSIH   + + + SR++
Sbjct: 608 KANDFRVSASSAVYTVGPELLQRKKRDPNTS-IRSIHEREQDKIIHSRSH 656


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 274 LRVYLLLGSSFISSMIEGSIGWSPLVGAGEMSLPL 170
           L V LL  + F+   I G I W+PL       LPL
Sbjct: 169 LTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPL 203


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 177 NDISPAPTSG-DHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYY 320
           + +S  P+   + PIL S   +I+L P+  Y     S      +S+N Y
Sbjct: 84  DQVSGIPSGSLEIPILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIY 132


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 244 FISSMIEGSIGWSPLVGAG 188
           F+     G +GW P++G+G
Sbjct: 371 FVIRAFGGKVGWDPILGSG 389


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 237 DIKLDPNRRYTRSIHSHREKRSLSRNYYTSFPIHLPPFYPRPII 368
           D+ L  +  YT    +   K ++  NY      HLP   PR +I
Sbjct: 843 DLVLTTHTNYTDMARAVANKLNVDPNYLQFTMAHLPSRTPRSVI 886


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +3

Query: 144 AGDEPLRLYKGNDISPAP---TSGDHPILPSIIDDIKLD---PNRRYTRSIHSHREKRSL 305
           A + P + YK   + P+    +S  H +L +   + +L    P R+YT S  ++R+K ++
Sbjct: 119 ASEVPKKKYKKIKVDPSARRTSSRMHTVLMAQSTETRLQEAKPRRKYTVSASANRQKGTM 178

Query: 306 SR 311
           ++
Sbjct: 179 TQ 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,728
Number of Sequences: 5004
Number of extensions: 39381
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)