Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N01
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)                 30   1.3  
SB_39668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               27   6.7  
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)               27   6.7  
SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                27   8.9  
SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
          Length = 1318

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 222 PSIIDDIKLDPNRRYTRSIHSHREKRSLSRNY 317
           PS + D    P RR TR + S REK   SR Y
Sbjct: 333 PSNLQDDDTSPPRRSTRELDSIREKERKSRQY 364


>SB_39668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 26  NRITDCVNDALGREFLSALHTTNIQTSSDEAHQYSKITGSWR 151
           N  T+   D    E   + HTTN  +SSDE     +  G W+
Sbjct: 13  NVSTETFEDYSDSESSQSDHTTNEDSSSDETESMDRFHGHWK 54


>SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 879

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 183 ISPAPTSGDHPILPSIIDDIK---LDPNRRYTRSIHSHREKRSLSRNYYTSFPIHLPPFY 353
           ISP PT   +  +P   DD+K    D  +      H+H+E  S  +  +  +P H+   Y
Sbjct: 464 ISPMPTQVPYSFIPMSADDVKEIVKDWVKPRIFKHHTHKEMTSFLKKVHELYP-HITRLY 522


>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1252

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 276 IHSHREKRSLSRNYYTSFPIHLPPFYPRPII 368
           +    E R + + +YTS+P H  P +P P++
Sbjct: 837 MQEEEEPRQVRQYHYTSWPDHGVPAHPAPLL 867


>SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 183 ISPAPTSGDHPILPSIIDDIK---LDPNRRYTRSIHSHREKRSLSRNYYTSFPIHLPPFY 353
           ISP PT   +  +P   DD+K    D  +      H+H+E  S  +  +  +P H+   Y
Sbjct: 464 ISPMPTQVPYSFIPMSADDVKEIVKDWVKPRIFKHHTHKEMTSFLKKVHELYP-HITRLY 522


>SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 584

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 127 FEDYGKLEMNH*GCTRAMTFHLRQRVVTIQYCLQSLT 237
           F+   K ++   GCTR   +   QR++ I  CL  +T
Sbjct: 8   FDSGIKFQITEYGCTRESVYSNTQRLMGITKCLMGIT 44


>SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 50  DALGREFLSALHTTNIQTSSDEAHQY-SKITGSW 148
           D + +  L+ LH T +   S + HQY SK   SW
Sbjct: 452 DQMSQAILAVLHHTVLSDDSKKRHQYCSKGNNSW 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,559
Number of Sequences: 59808
Number of extensions: 291547
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)