Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N01
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02730.1 68414.m00226 cellulose synthase family protein simil...    28   3.1  
At4g11390.1 68417.m01837 DC1 domain-containing protein contains ...    28   4.2  
At5g19840.1 68418.m02357 transcription factor jumonji (jmjC) dom...    27   5.5  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    27   5.5  
At2g18245.1 68415.m02127 expressed protein                             27   5.5  
At5g41080.2 68418.m04994 glycerophosphoryl diester phosphodieste...    27   7.3  
At5g41080.1 68418.m04993 glycerophosphoryl diester phosphodieste...    27   7.3  
At1g67310.1 68414.m07661 calmodulin-binding protein similar to a...    27   7.3  
At5g57130.1 68418.m07135 expressed protein                             27   9.6  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    27   9.6  
At1g64810.1 68414.m07348 expressed protein contains Pfam PF05634...    27   9.6  
At1g21610.2 68414.m02703 wound-responsive family protein similar...    27   9.6  
At1g21610.1 68414.m02702 wound-responsive family protein similar...    27   9.6  

>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
            cellulose synthase catalytic subunit [gi:13925881] from
            Nicotiana alata, cellulose synthase-4 [gi:9622880] from
            Zea mays
          Length = 1181

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +2

Query: 236  RYKTGPQQKVHSQYS--FASRKKKFIEKLLYF--FPYPFTS 346
            R+ TG  +   S+ +  FA+R+ KF++++ YF    YPFTS
Sbjct: 925  RWATGSVEIFFSRNNAIFATRRMKFLQRVAYFNVGMYPFTS 965


>At4g11390.1 68417.m01837 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 514

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 321 YSNFSINFFFRDANEYCE-CTF 259
           Y  F +N FFRD N+ C  CT+
Sbjct: 157 YLRFHVNGFFRDGNKRCSACTY 178


>At5g19840.1 68418.m02357 transcription factor jumonji (jmjC)
           domain-containing protein low similarity to PASS1 [Homo
           sapiens] GI:21591407; contains Pfam profile PF02373:
           jmjC domain
          Length = 505

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 368 YYWSRIKRR*MDRERSIVISR*TS 297
           YY  RI RR +DRE S+++S+ +S
Sbjct: 296 YYLRRITRRLIDREMSLLVSKPSS 319


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 240 IKLDPNRRYTRSIHSHREKRSLSRNYYTSFP--IHLPPFYPRPIILPREPRNVFPIY 404
           +K + N+  T S H+H      +   YT+ P  I+ PP YP PI  P  P    PIY
Sbjct: 29  VKQNFNKYETDSGHAHPPPIYGAPPSYTTPPPPIYSPPIYPPPIQKP--PTYSPPIY 83



 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 PIHLPPFYPRPIILPREPRNVFPIY 404
           P + PP YP PI  P  P    PIY
Sbjct: 76  PTYSPPIYPPPIQKPPTPTYSPPIY 100



 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 PIHLPPFYPRPIILPREPRNVFPIY 404
           P + PP YP PI  P  P    PIY
Sbjct: 93  PTYSPPIYPPPIQKPPTPTYSPPIY 117



 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 330 PIHLPPFYPRPIILPREPRNVFPIY 404
           P + PP YP PI  P  P    PIY
Sbjct: 110 PTYSPPIYPPPIQKPPTPTYSPPIY 134


>At2g18245.1 68415.m02127 expressed protein
          Length = 398

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 198 TSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYTSFP 332
           +SGD  ++PS   ++++   ++  R IHS   K S   ++Y +FP
Sbjct: 332 SSGDK-VVPSHSVELRIREQQKIGRKIHSFNFKSSPHVDHYRNFP 375


>At5g41080.2 68418.m04994 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 358

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 237 DIKLDPNRRYTRS--IHSHREKRSLSRNYYTSFPIHLPPFYPRPIILPREPRNVFPIY 404
           ++K D    Y R   +H  R    +  NY    P+    F P    L RE ++ +P++
Sbjct: 160 ELKFDDQTVYEREFLVHILRSVLQVVSNYAKDRPVIFSSFQPDAAKLVRELQSTYPVF 217


>At5g41080.1 68418.m04993 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 374

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 237 DIKLDPNRRYTRS--IHSHREKRSLSRNYYTSFPIHLPPFYPRPIILPREPRNVFPIY 404
           ++K D    Y R   +H  R    +  NY    P+    F P    L RE ++ +P++
Sbjct: 176 ELKFDDQTVYEREFLVHILRSVLQVVSNYAKDRPVIFSSFQPDAAKLVRELQSTYPVF 233


>At1g67310.1 68414.m07661 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1035

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 226 EGSIGWSPLVGAGEMSLPLYNLSGSSPAS 140
           +GS  W  ++ A E S+PL N  GS+P+S
Sbjct: 358 QGSESWKDVLEACEASIPL-NSEGSTPSS 385


>At5g57130.1 68418.m07135 expressed protein
          Length = 920

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 225 SIIDDIKLDPNRRYTRSIHSHREKRS 302
           S+ID + L PN+R T SI   R + S
Sbjct: 491 SLIDSLGLKPNQRATNSIAKFRRQNS 516


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 321 TSFPIHLPPFYPRPIILPREPRNV----FPIYAQVSK*PA 428
           TS   H PP  P P  LP  P N+    FP + + SK P+
Sbjct: 107 TSTASHPPPAPPPPASLPTFPANISSLLFPTHNKQSKPPS 146


>At1g64810.1 68414.m07348 expressed protein contains Pfam PF05634:
           Arabidopsis thaliana protein of unknown function
           (DUF794)
          Length = 436

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 285 HREKRSLSRNYYTSFPIHLPPFYPRPIILPREPRNVFPI 401
           HRE+ S  + Y ++  + LPP      ILP+  +  +PI
Sbjct: 58  HREQTSFKKRYVSTQNVDLPP------ILPKNKKKPYPI 90


>At1g21610.2 68414.m02703 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 683

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = +3

Query: 162 RLYKGNDISP------APTSGDHPILPSIIDDIKLD 251
           RLYKGND S       AP   ++    S IDD +LD
Sbjct: 106 RLYKGNDSSDGEELDGAPDDDEYDTEDSFIDDAELD 141


>At1g21610.1 68414.m02702 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 684

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = +3

Query: 162 RLYKGNDISP------APTSGDHPILPSIIDDIKLD 251
           RLYKGND S       AP   ++    S IDD +LD
Sbjct: 106 RLYKGNDSSDGEELDGAPDDDEYDTEDSFIDDAELD 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,745,250
Number of Sequences: 28952
Number of extensions: 194997
Number of successful extensions: 552
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)