Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M24
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57870.1 68414.m06566 shaggy-related protein kinase kappa, pu...    30   0.82 
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati...    27   5.8  
At4g21550.1 68417.m03113 transcriptional factor B3 family protei...    27   7.6  

>At1g57870.1 68414.m06566 shaggy-related protein kinase kappa,
           putative / ASK-kappa, putative similar to shaggy-related
           protein kinase kappa SP:Q39019 GI:717180 from
           [Arabidopsis thaliana]
          Length = 420

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 225 ELLTSLDIPNDDCIRSSFTSITSNFEVYTRYYTE 326
           +++  LD PN  C++ SF S T N EVY     E
Sbjct: 125 QIMQMLDHPNVVCLKHSFYSRTENEEVYLNLVLE 158


>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
           identified as SEC22 by Raikhel, NV, et al. in Plant
           Physiol. 124: 1558-69 (2000); similar to vesicle
           trafficking protein gb|U91538 from Mus musculus; ESTs
           gb|F15494 and gb|F14097 come from this gene
          Length = 218

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 325 NIAHKVYLKEGPYELHSELEGRCCLSV*C 411
           N A ++ ++ GPY  H  +EGR C    C
Sbjct: 48  NDASRMSVETGPYVFHYIIEGRVCYLTMC 76


>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
           low similarity to SP|Q01593 Abscisic acid-insensitive
           protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
           protein homolog {Oryza sativa}; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 721

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 213 PAHEELLTSLDIPNDDCIRSSFTSITSN 296
           P   +   S  +P+DD ++SSFTS +S+
Sbjct: 665 PGSNKTTKSETLPHDDTVKSSFTSPSSS 692


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,984
Number of Sequences: 28952
Number of extensions: 132779
Number of successful extensions: 270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)