Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M23
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   3.7  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   8.5  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 581 LLYENKTCQILIRLVICYKYINFLKKCTTIVSNKRITIIHYKDNS 447
           L+ +  T + L+  ++CY  ++FLK   T+V +  + +  Y  N+
Sbjct: 278 LVGDLSTLKFLLSALVCYDCVSFLKLLDTLVLS--VNVSSYPSNA 320


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 197 LRGESYVFIIIDEVIFYVIYVDVSTFELF 283
           +RG  YV+  +DE  ++ ++  ++ F LF
Sbjct: 133 IRGYGYVYDKLDEYGYFYLFFSIALFLLF 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,602
Number of Sequences: 5004
Number of extensions: 40894
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)