Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M23
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    31   0.93 
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355...    29   2.2  
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156...    28   6.6  

>08_02_0864 +
           21994286-21994989,21996257-21996958,21997221-21997374,
           21997494-21997838,21998323-21999240,21999312-21999640,
           21999709-21999832,21999901-22000071,22000188-22001648,
           22002647-22002910,22003866-22004189
          Length = 1831

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 122 IYLIRPLALKRSRMRPLMYRISRCRSEHLSPS 27
           ++L + ++L  +  RPL+ RISRC   H+ PS
Sbjct: 553 LFLEKNISLVLNIKRPLLERISRCTGAHIVPS 584


>01_06_1822 -
           40132919-40133208,40134313-40134398,40135067-40135566,
           40135708-40135905
          Length = 357

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 498 CTLLQKIYIFITNNQSYQYLTCFIFI 575
           CT L   ++F+ + + + YLTCFI +
Sbjct: 324 CTSLSLPFLFLNSTRMHTYLTCFIIL 349


>03_03_0266 -
           16014740-16015045,16015566-16015601,16015623-16015643,
           16016331-16016591,16017504-16018985,16019834-16019989,
           16020154-16020277,16020399-16020615,16020877-16021774,
           16022947-16023291,16023371-16023565,16023751-16024453,
           16024866-16025467
          Length = 1781

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 122 IYLIRPLALKRSRMRPLMYRISRCRSEHLSPS 27
           + L + ++L  +  RPL+ RI+RC + H+ PS
Sbjct: 533 LLLEKNISLVLNIKRPLLDRIARCTNAHIVPS 564


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,897
Number of Sequences: 37544
Number of extensions: 231040
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)