Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M23
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  27   8.8  
SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08)       27   8.8  

>SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 7   LRKHHSELGDKCSDLQREIRYIKGLMRDLFKAKGLIK*IHSVNRLQ 144
           L+K   ++     DLQ EI Y+KG++ +  +  GL+K I + + ++
Sbjct: 304 LQKDCEDMKGLVKDLQMEIAYLKGVLANESQLAGLLKNIGNTDGVE 349


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 1    QALRKHHSELGDKCSDLQREIRYIKGLMRDLFKAK 105
            + LR +   L D   + QR    IKGL+RDL   K
Sbjct: 1591 ETLRDYEGRLSDLTIEKQRNEERIKGLVRDLSTLK 1625


>SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08)
          Length = 415

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 105 RSNQINPQRQPPPAIESVKTAYL 173
           R++Q+NP++ PPP +   K  +L
Sbjct: 335 RAHQLNPEKIPPPPLRVAKAEHL 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,598
Number of Sequences: 59808
Number of extensions: 305246
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)