Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M22
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 0.78
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 4.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 4.2
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 25 4.2
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 4.2
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 7.3
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 7.3
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 24 9.6
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.6
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 24 9.6
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 24 9.6
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 24 9.6
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 0.78
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +3
Query: 180 TVAIGLTKLLNATLKLSLDSDALKYLLQRSWEHLLATDSTGLTRTAQSISSASTANPRIL 359
T + L K+ ++++ L+L S +++ + + + + + SIS AST+NP IL
Sbjct: 3767 TKSSSLGKIGSSSISLTLSSSSIRDAELPTPSRMTSPSLSETIPQSSSISEASTSNPNIL 3826
Query: 360 DCGGDSAFDELTSSCISA 413
S +T+S +A
Sbjct: 3827 SSTVLSFDSTITNSFTTA 3844
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 284 GYRFYRSDTNCPKYFICVDSQSPNSGLRW*FSV 382
G Y DT+ + +I +D+++ NS ++W SV
Sbjct: 341 GATLYLEDTDGVQRYISLDNRASNSLVKWCLSV 373
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 258 VGTSGHRNPRKASASHSATWSGQSQRYVSGLNARPSGHT 142
+ TS H NPR+ + A + S R +G + S HT
Sbjct: 508 ITTSSHHNPREQEIAKLADDAFASFRQTAGTSTANSTHT 546
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 345 NPRILDCGGDSAFDELTSSCISADQVP 425
+P+I S DE+ S C+ AD+VP
Sbjct: 136 SPQIYKFKNLSLRDEMVSDCVFADEVP 162
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 421 TWSADIHEEVSSSNAESPPQSRIRGLAVDA 332
TW A+ H+ SS+ +SP + R L+VDA
Sbjct: 376 TWIANKHKTASSATVDSPLR---RSLSVDA 402
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 139 VIADTVYAVSEAAAIARITDAEVSELVRTQFSWLSRL 29
V+ T+ + +IA T + +RTQFSW++ L
Sbjct: 539 VVFTTIMGQTITPSIA-FTSISLFSFIRTQFSWIAYL 574
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 11 LERSALQPAQPTELCPHQFGYFRIGD---SSNCSGFRNCV 121
LE SAL+ + P ELC + R+ D SSN + N V
Sbjct: 281 LESSALEFSWPLELCFLETSALRMNDDSLSSNLTDLNNLV 320
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 175 VWAECKTFWTYEVIADTVYAVSEAAAIARITDAE 74
+ +EC T VIA+ +Y VSE I R TD E
Sbjct: 23 ITSECNTPQQQNVIAEGLYNVSEPFPI-RNTDEE 55
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 442 SSSGHSGTWSADIHEEVSSSNAESPPQSRIRGLA 341
SSS SG+W D V S A SP ++ + L+
Sbjct: 378 SSSSLSGSWHGDTENSVKQSLA-SPSEASLPNLS 410
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 370 VIQRSMN*PLRVYLPTKYRNALRNL 444
+I+ +N PLR+Y+ YR++ R +
Sbjct: 160 LIESHLNRPLRLYIYNHYRDSTRQV 184
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 288 TDSTGLTRTAQSISSASTANP 350
T+STG + T + +S+ST+NP
Sbjct: 238 TNSTGGSETGGAANSSSTSNP 258
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +2
Query: 158 LAFSPDTYRCDWPDQVAECDAEAFLGFRCPEVPTSKELGAPAGYRFYRSDTNCPKYF 328
LA ++ C P + E F P P+SK L P + Y ++ P Y+
Sbjct: 410 LATHNRSFICSLPHFLRRWSNEHGRKFFVPVEPSSKNLKVPYSFNNYYVVSSMPTYY 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,431
Number of Sequences: 5004
Number of extensions: 39980
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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