Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M22
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11720.1 68417.m01870 hypothetical protein                          34   0.052
At5g63790.1 68418.m08006 no apical meristem (NAM) family protein...    30   0.85 
At5g08790.1 68418.m01042 no apical meristem (NAM) family protein...    30   0.85 
At5g45390.1 68418.m05578 ATP-dependent Clp protease proteolytic ...    29   2.0  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    28   2.6  
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom...    28   3.4  
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica...    27   4.5  
At1g22470.1 68414.m02808 expressed protein                             27   4.5  

>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 33.9 bits (74), Expect = 0.052
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 165 SAQTHTVAIGLTKLLNATLKLSLDSDALKYLLQRS 269
           +A  H+ +IG+T+ LN  L + L +D ++Y+ QRS
Sbjct: 319 NAGPHSFSIGVTETLNTNLMIELRADDIEYVFQRS 353


>At5g63790.1 68418.m08006 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           contains similarity to NAC-domain protein
          Length = 312

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 266 ELGAPAGYRFYRSDTNCPKYFIC 334
           EL  PAG+RF+ +D    K+++C
Sbjct: 47  ELNLPAGFRFHPTDEELVKFYLC 69


>At5g08790.1 68418.m01042 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 283

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 266 ELGAPAGYRFYRSDTNCPKYFIC 334
           EL  PAG+RF+ +D    K+++C
Sbjct: 4   ELNLPAGFRFHPTDEELVKFYLC 26


>At5g45390.1 68418.m05578 ATP-dependent Clp protease proteolytic
           subunit (ClpP4) identical to nClpP4 GI:5360593 from
           [Arabidopsis thaliana]
          Length = 292

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 174 SGLNARPSGHTKS*PTPFTQFLKPLQLLESPMR 76
           S LN+  S  + S P P   +LKP +L+  P+R
Sbjct: 17  SRLNSSSSASSSSFPKPNNLYLKPTKLISPPLR 49


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 273 EHLLATDSTGLTRTAQSISSASTANP 350
           + L ++ STG+TR A S+SS+S   P
Sbjct: 93  KRLASSVSTGITRVASSVSSSSARKP 118


>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
           domain-containing protein similar to nuclear protein
           5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
           PF02373: jmjC domain
          Length = 883

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 303 LTRTAQSISSASTANPRILDCGGDSAFDELT----SSCISADQVPECPEELRI 449
           L   A++  S+   +PR+L+C   S   ELT    S   S+D    CPE L +
Sbjct: 453 LEHKAETFLSSYNISPRMLNCRCSSLETELTRKSASRTTSSDNYLFCPESLGV 505


>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 981

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 261 EVGTSGHRNPRKASASHSATWSGQSQRYVSGLNARPSGHTKS 136
           E  T     PR A  SH    S     ++SG ++  +GHTK+
Sbjct: 17  ETRTRPQHPPRIAEGSHRRDLSTLRPHFLSGSSSGANGHTKT 58


>At1g22470.1 68414.m02808 expressed protein
          Length = 146

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 237 SDALKYLLQRSWEHLLATDSTGLTRTAQSISSASTANPRILDCGGDSAFDELTSSCIS 410
           +++L  L    +++  +  S+ L +T  S SSAS+ +         S++    SSC+S
Sbjct: 59  NESLSKLSSEFYDYSSSMSSSSLAKTMSSCSSASSESESDFSSTAISSYYSSVSSCLS 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,654,218
Number of Sequences: 28952
Number of extensions: 222688
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)