Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M21
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.0  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.2  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    26   3.2  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   7.3  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   9.6  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   9.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.6  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 367 VLEFTPTFWRLNSPGQSGFRRVSSRERSGYGLSSQW 260
           VL F   FW LN PG+  F  V   + + Y L  ++
Sbjct: 67  VLSFITRFWNLNLPGEVVFDEVHFGKFASYYLQGKY 102


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 146 YVRLQYPRYHARVANSLKNLFTLLLKN 226
           Y+R     +H  +  +L+NLFTL+  N
Sbjct: 410 YMRCNLQEHHNAIVQALQNLFTLIKLN 436


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 252 KHGHWELSPYPDRSRDETL 308
           +HG+W+L P+P    D  +
Sbjct: 74  RHGYWKLHPHPHHQHDSII 92


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 154 PAISEVSCARCQLFKKPFHAPFEEPQIPWYSLGNTAT 264
           PA +E   A C+   K FH P E       S GNT++
Sbjct: 280 PAFTEEILA-CENLLKVFHVPVESSTTNAVSTGNTSS 315


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 343 WRLNSPGQSGFRRVSSRERSGY 278
           W+  SPG + F  +S  ER  +
Sbjct: 151 WKYESPGNNVFEAISPHERESF 172


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 86   TPRPYSFPPTSITLHLTDLQYSLKASHI 3
            TP+ +  PP++  L  TD + SL  S+I
Sbjct: 925  TPQSFFIPPSTPDLSFTDNKNSLSPSNI 952


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 171  YLGYCRRTYTTVTAY 127
            ++GYCR T T +T Y
Sbjct: 1558 WIGYCRLTRTRITGY 1572


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 171  YLGYCRRTYTTVTAY 127
            ++GYCR T T +T Y
Sbjct: 1584 WIGYCRLTRTRITGY 1598


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 190 LFKKPFHAPFEEPQIPWYSLGNTATGSSV 276
           LF   F AP+ E + PW +L      SSV
Sbjct: 20  LFHSVFAAPYSEDEEPW-NLNQNKNASSV 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,809
Number of Sequences: 5004
Number of extensions: 59683
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)