Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M21
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9654| Best HMM Match : Nop10p (HMM E-Value=2)                       31   0.81 
SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23)                 30   1.4  
SB_7025| Best HMM Match : Metallothionein (HMM E-Value=6)              30   1.4  
SB_28960| Best HMM Match : PMT (HMM E-Value=3.5)                       29   1.9  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.5  
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)                 29   3.3  
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)                       29   3.3  
SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09)                 28   4.3  
SB_54210| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         28   5.7  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    27   7.6  
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   7.6  
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)         27   7.6  
SB_12807| Best HMM Match : Extensin_2 (HMM E-Value=0.56)               27   7.6  
SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)                  27   7.6  
SB_6967| Best HMM Match : PHD (HMM E-Value=1.2e-08)                    27   7.6  

>SB_9654| Best HMM Match : Nop10p (HMM E-Value=2)
          Length = 323

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 365 NSLPMASCTMVKIKCRHSIINIFTKFIFNCLELDSC*RYNCGKEVGRGITQKINL 529
           +SL  A CT   +   H    I+ +F  NC +L S      G E+   ++ K+NL
Sbjct: 134 SSLKKARCTKESLTIHHEGTYIYKRFFSNCSQLSSA----IGPELTNCLSHKVNL 184


>SB_20893| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-23)
          Length = 435

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 34  SVKCNVMDVGGKEYGRGVSGWFL*R*SGKEMVSGHRSICTPAISEVSCARCQL 192
           +VK  + D  G   G GV G F+ R SG+    GH S  +PA  +   A  QL
Sbjct: 282 TVKMTMSDRSGSGGGSGV-GRFVRRWSGRSSTRGHSSSESPAAKDAVMACVQL 333


>SB_7025| Best HMM Match : Metallothionein (HMM E-Value=6)
          Length = 136

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 374 PMASCTMVKIKCRHSIINIFTKFIFNCLELDSC*RYNC 487
           P+A+CT +  K R +  NI  K + NC  +    R NC
Sbjct: 34  PLANCTNIADKPRANCTNIARKPLVNCTNIADKPRVNC 71



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 374 PMASCTMVKIKCRHSIINIFTKFIFNCLELDSC*RYNCGKEVGRGITQKINLCSR 538
           P  +CT +  K R +  NI  K + NC  +    R NC     + +   IN+  +
Sbjct: 67  PRVNCTNIADKPRANCTNIADKPLVNCTNIAGKPRANCTNIADKPLVNCINIAGK 121



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 374 PMASCTMVKIKCRHSIINIFTKFIFNCLELDSC*RYNCGKEVGR 505
           P+ +CT +  K R +  NI  K + NC+ +      NC    G+
Sbjct: 89  PLVNCTNIAGKPRANCTNIADKPLVNCINIAGKPLVNCTNIAGK 132


>SB_28960| Best HMM Match : PMT (HMM E-Value=3.5)
          Length = 196

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 334 LASKMWE*-TPKLPADGELYHGKN*VSAFNNQYFYKVYI*LFGIGFMLTLQLWERGRKGY 510
           L +++W+  TPK     E++ GK       ++YF+ V+  L  + F +T   ++ G  GY
Sbjct: 80  LGTRLWQLSTPKHVVFDEVHFGKFTNFFMQHKYFFDVHPPLGKLLFAVTDVNYDNGNSGY 139

Query: 511 YPKDK 525
              DK
Sbjct: 140 GVNDK 144


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 218 LKNPKFPGIPWETRPLGAQSIPGSFTG*NSPETG 319
           L+NP+FP     ++P      PGSF G +SP  G
Sbjct: 22  LQNPQFPYGNQNSQPSDRLQHPGSFPGFSSPNQG 55


>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 326 RTVRFQESFIP*TIRVWTELPVA 258
           +T  F+ESF P  IR+W  LPV+
Sbjct: 626 KTNVFKESFFPHAIRMWNGLPVS 648


>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
          Length = 1477

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = -1

Query: 188 WQRAHDTSDIAG------VHILR*PLTISLPL*RHKNHPDTPRP 75
           W R+HD +DI G       H +R  L +   + R++NHP+   P
Sbjct: 609 WIRSHDPNDIIGPAGIGDAHYIRGDLVLDYKI-RYENHPNASAP 651


>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
          Length = 244

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 326 RTVRFQESFIP*TIRVWTELPVA 258
           +T  F+ESF P  IR+W  LPV+
Sbjct: 208 KTNVFKESFFPHAIRMWNGLPVS 230


>SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09)
          Length = 557

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 345 FGG*IVPDSPVSGEFHPVNDPGMD*APSGRVSQGIPGNLGFFKRSVKR 202
           FGG    + PV  +  P+ DPG + +P   V   +P       RS+ R
Sbjct: 441 FGGSFTDELPVYQDEEPLGDPGTNSSPEFGVLNSVPSLTYSEMRSIHR 488


>SB_54210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 196 KKPFHAPFEEPQIPWYSLGNTAT 264
           KKP H P     I WYS GN  T
Sbjct: 356 KKPCHRPVTAMVITWYSRGNCNT 378


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 303 TLLKPDCPGLFSLQNVGVNSKTPCR 377
           TL  P C  L  L N+ + SKT CR
Sbjct: 389 TLRAPKCECLVLLMNINLRSKTQCR 413


>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 888

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 329 SRTVRFQESFIP*TIRVWTELPVAVFPREY 240
           +RT  F+ SF+P  IR+W  L V V    Y
Sbjct: 739 ARTNIFKYSFVPRAIRLWNSLEVTVVLAAY 768


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 227 PKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSGTI*PP 343
           P  PG P    P G   +PG+  G N P  G++G + PP
Sbjct: 452 PGLPGPPGPQMPPGPPGLPGA-PGPNGP-PGINGPLGPP 488



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 227 PKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSGTI*PP 343
           P  PG P    P G   +PG+  G N P  G++G + PP
Sbjct: 537 PGLPGPPGPQMPPGPPGLPGA-PGPNGP-PGINGPLGPP 573


>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1025

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 373 QGVLEFTPTFWRLNSPGQSGFRRVSSRERSGYG 275
           QG LEF  + +++N P  S F  ++S  R  +G
Sbjct: 37  QGDLEFKASSFKVNQPRSSAFAFINSLSRQRHG 69


>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
          Length = 895

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 373 QGVLEFTPTFWRLNSPGQSGFRRVSSRERSGYG 275
           QG LEF  + +++N P  S F  ++S  R  +G
Sbjct: 37  QGNLEFKASSFKVNQPRSSAFAFINSLSRQRHG 69


>SB_12807| Best HMM Match : Extensin_2 (HMM E-Value=0.56)
          Length = 430

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 207 KRFFKELATRA*YLGYCRRTYTTVTAY-HLFATLAS*KPSRHPSSILLPPDVHYVTLNRS 31
           KRF   +   A Y+   R    ++ AY H         P R PS I  PP   YV++N++
Sbjct: 320 KRFPSGIPPLAQYVSINRIPIGSLAAYPHWPICEYQPDPKRFPSGI--PPLAQYVSINQT 377

Query: 30  PI 25
           PI
Sbjct: 378 PI 379


>SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)
          Length = 456

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 181 ARMIPRILQAYIYYGDRLPSLCHFSVIKTIQTPLVHTPSPRRPLRY 44
           +R I   +Q YI+Y   +  L    +  T+Q  + + P+P RP RY
Sbjct: 5   SRYIYSTVQVYIFYRPGIYILPSRYIYSTVQVYIFYRPAP-RPSRY 49


>SB_6967| Best HMM Match : PHD (HMM E-Value=1.2e-08)
          Length = 410

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 373 QGVLEFTPTFWRLNSPGQSGFRRVSSRERSGYG 275
           QG LEF  + +++N P  S F  ++S  R  +G
Sbjct: 37  QGNLEFKASSFKVNQPRSSAFAFINSLSRQRHG 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,475,477
Number of Sequences: 59808
Number of extensions: 452250
Number of successful extensions: 1138
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)