Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M21
(545 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M69008-1|AAA52754.1| 623|Homo sapiens alpha-1 type XIII collage... 33 0.86
AL138925-3|CAI15452.1| 683|Homo sapiens collagen type XIII alph... 31 2.0
AL138925-2|CAI15451.2| 695|Homo sapiens collagen type XIII alph... 31 2.0
AL138925-1|CAI15450.1| 717|Homo sapiens collagen type XIII alph... 31 2.0
AJ293624-1|CAC00688.1| 717|Homo sapiens type XIII collagen prot... 31 2.0
U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain... 31 3.5
U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain... 31 3.5
U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein. 31 3.5
D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein. 31 3.5
AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha ... 31 3.5
AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha ... 31 3.5
AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha ... 31 3.5
AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha ... 31 3.5
AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha ... 31 3.5
AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha ... 31 3.5
AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha... 31 3.5
AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha... 31 3.5
>M69008-1|AAA52754.1| 623|Homo sapiens alpha-1 type XIII collagen
protein.
Length = 623
Score = 32.7 bits (71), Expect = 0.86
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 170 YHARVANSLKNLFTLLLKNPKFPGIPWETRPLGAQSIPG 286
Y+ + +L+ + TL L P PG+P + P GA IPG
Sbjct: 353 YNGNINEALQEILTLALMGP--PGLPGQIGPPGAPGIPG 389
>AL138925-3|CAI15452.1| 683|Homo sapiens collagen type XIII alpha 1
protein.
Length = 683
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 170 YHARVANSLKNLFTLLLKNPKFPGIPWETRPLGAQSIPG 286
Y+ + +L+ + TL L P PG+P + P GA IPG
Sbjct: 424 YNGNINEALQEIRTLALMGP--PGLPGQIGPPGAPGIPG 460
>AL138925-2|CAI15451.2| 695|Homo sapiens collagen type XIII alpha 1
protein.
Length = 695
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 170 YHARVANSLKNLFTLLLKNPKFPGIPWETRPLGAQSIPG 286
Y+ + +L+ + TL L P PG+P + P GA IPG
Sbjct: 424 YNGNINEALQEIRTLALMGP--PGLPGQIGPPGAPGIPG 460
>AL138925-1|CAI15450.1| 717|Homo sapiens collagen type XIII alpha 1
protein.
Length = 717
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 170 YHARVANSLKNLFTLLLKNPKFPGIPWETRPLGAQSIPG 286
Y+ + +L+ + TL L P PG+P + P GA IPG
Sbjct: 446 YNGNINEALQEIRTLALMGP--PGLPGQIGPPGAPGIPG 482
>AJ293624-1|CAC00688.1| 717|Homo sapiens type XIII collagen
protein.
Length = 717
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 170 YHARVANSLKNLFTLLLKNPKFPGIPWETRPLGAQSIPG 286
Y+ + +L+ + TL L P PG+P + P GA IPG
Sbjct: 446 YNGNINEALQEIRTLALMGP--PGLPGQIGPPGAPGIPG 482
>U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain
protein.
Length = 1690
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1292 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1324
>U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain
protein.
Length = 1691
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1293 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1325
>U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein.
Length = 1691
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1293 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1325
>D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein.
Length = 1600
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1288 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1320
>AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1293 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1325
>AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1292 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1324
>AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1293 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1325
>AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1292 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1324
>AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1293 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1325
>AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1292 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1324
>AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1293 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1325
>AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 224 NPKFPGIPWETRPLGAQSIPGSFTG*NSPETGLSG 328
+P FPGIP P G Q IPG F+G E GL G
Sbjct: 1292 DPGFPGIPGPKGPKGDQGIPG-FSG-LPGELGLKG 1324
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,452,828
Number of Sequences: 237096
Number of extensions: 2215097
Number of successful extensions: 6505
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6483
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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