Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M21
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    28   3.8  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     28   3.8  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     28   3.8  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    28   5.0  
AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U23182-2|ABD94105.1|  441|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U23182-1|ABD94104.1|  468|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen prot...    27   8.8  

>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 312 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 226
           SG   P   PG D AP    + G PGN G
Sbjct: 127 SGAAGPAGSPGQDGAPGNDGAPGAPGNPG 155


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 312 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 226
           SG   P   PG D AP    + G PGN G
Sbjct: 127 SGAAGPAGSPGQDGAPGNDGAPGAPGNPG 155


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 312 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 226
           SG   P   PG D AP    + G PGN G
Sbjct: 127 SGAAGPAGSPGQDGAPGNDGAPGAPGNPG 155


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 312 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 226
           SG   P   PG D AP    + G PGN G
Sbjct: 127 SGAAGPAGSPGQDGAPGNDGAPGAPGNPG 155


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 327 PDSPVSGEFHPVNDPGMD*APSGRVSQGIPGNLG 226
           P S   G   P  DPG+D AP    S G PG  G
Sbjct: 276 PGSSQPGPQGPPGDPGIDGAPGNPGSPGEPGPPG 309


>AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14a protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 284 RVWTELPVA-VFPREYQGIWGSSKGA*KGFLKSWQRAH 174
           RV    P+  V  + Y+G+W S+K A  G ++ +Q  H
Sbjct: 9   RVLNRTPILFVEDKNYEGMWKSTKEAIPGLIEKFQIVH 46


>AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14b protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 284 RVWTELPVA-VFPREYQGIWGSSKGA*KGFLKSWQRAH 174
           RV    P+  V  + Y+G+W S+K A  G ++ +Q  H
Sbjct: 50  RVLNRTPILFVEDKNYEGMWKSTKEAIPGLIEKFQIVH 87


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 312 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 226
           +G   P   PG D AP    + G PGN G
Sbjct: 128 TGAAGPAGSPGQDGAPGNDGAPGAPGNPG 156


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 312 SGEFHPVNDPGMD*APSGRVSQGIPGNLG 226
           +G   P   PG D AP    + G PGN G
Sbjct: 124 TGAAGPAGSPGQDGAPGNDGAPGAPGNPG 152


>U23182-2|ABD94105.1|  441|Caenorhabditis elegans Hypothetical
           protein F40B5.2b protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 447 LIVWNWIHVNVTIVGKR*EGVLPKR*IYVHVIL 545
           +IV  +IHV++ I  K  +GV   R + +H IL
Sbjct: 9   IIVIGFIHVSIAIARKSTDGVAHHRLVRLHTIL 41


>U23182-1|ABD94104.1|  468|Caenorhabditis elegans Hypothetical
           protein F40B5.2a protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 447 LIVWNWIHVNVTIVGKR*EGVLPKR*IYVHVIL 545
           +IV  +IHV++ I  K  +GV   R + +H IL
Sbjct: 9   IIVIGFIHVSIAIARKSTDGVAHHRLVRLHTIL 41


>AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen protein
           101 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 309 GEFHPVNDPGMD*APSGRVSQGIPGNLG 226
           G   P   PG D AP    + G PGN G
Sbjct: 126 GSAGPAGSPGQDGAPGNDGAPGAPGNPG 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,291
Number of Sequences: 27780
Number of extensions: 331979
Number of successful extensions: 847
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)