Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M21
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62570.1 68416.m07029 DNAJ heat shock N-terminal domain-conta...    30   0.88 
At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative si...    29   2.0  
At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative si...    29   2.0  
At3g04300.1 68416.m00455 expressed protein                             28   4.7  
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea...    28   4.7  

>At3g62570.1 68416.m07029 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 552

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 194 LKNLFTLLLKNPKFPGIPWETRPLGAQSIPG 286
           LK L+  +L++ K PG PW+   +  + IPG
Sbjct: 340 LKILYNTILRDRKLPGPPWKRHNVKYREIPG 370


>At3g48110.2 68416.m05246 aminoacyl-t-RNA synthetase, putative
           similar to aminoacyl-t-RNA synthetase GI:2654226 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF02092
           glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
           synthetase alpha subunit
          Length = 1063

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 10  EALREYWRSVKCNVMDVGGKEYGRG 84
           + L+EYW SV C VM     E G G
Sbjct: 78  QRLQEYWASVGCAVMQPSNTEVGAG 102


>At3g48110.1 68416.m05245 aminoacyl-t-RNA synthetase, putative
           similar to aminoacyl-t-RNA synthetase GI:2654226 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF02092
           glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA
           synthetase alpha subunit
          Length = 1064

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 10  EALREYWRSVKCNVMDVGGKEYGRG 84
           + L+EYW SV C VM     E G G
Sbjct: 78  QRLQEYWASVGCAVMQPSNTEVGAG 102


>At3g04300.1 68416.m00455 expressed protein 
          Length = 96

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 301 SSRERSGYGLSS--QWPCFPGNTREFGVLQKEREKVF*RVGNARMIPRILQAYIYYG 137
           SSR  S  G+ S  +W C PG   ++ ++ +ERE  +   G  ++ P+    ++ +G
Sbjct: 10  SSRRLSDLGVMSWPKWSCQPG---KYALVFEERETCYLVKGKVKVYPKGSSEFVEFG 63


>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
           sapiens]
          Length = 482

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 144 YMYACNIRGIMRALPTL*KTFSRSF*RTPNSLVFPGKHGHWELSPYP 284
           Y + CN +G +     + K       RTP+ L  PG  G W  SP P
Sbjct: 64  YDWRCNGKGYVAYRNFISKPRKWENLRTPSLLSSPGNSGRWLPSPSP 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,187
Number of Sequences: 28952
Number of extensions: 315005
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)