Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M20
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   0.76 
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    25   1.7  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    24   3.1  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    23   5.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    23   7.0  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 155 ADYVPARVVRDISNYNISVSWQSSSCLP 72
           A Y PA++ +D  +Y   + W  ++ LP
Sbjct: 463 ASYYPAKMAQDNKDYRRILGWMKNNWLP 490


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 54  HVPQIAGKAARALPRYTDIIVADVA 128
           H+   A KA RALP Y   IV ++A
Sbjct: 545 HIVDKAWKATRALPLYRTRIVRELA 569


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 21  AIQAVTLLMALHVPQIAGKAA----RALPRYTDIIVADVAYYACGNVIRAEGQGGS 176
           A+QAV +LM  + P+IA  A+    R+   Y   +V +        V++ + +GG+
Sbjct: 372 ALQAVQMLMIEYAPEIATLASSTDNRSNSTYASNVVINDTNTTTTIVVKEKDRGGA 427


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 122 CRVLRVRERNPRGGSGRVAG 181
           C VL   E+NP+    RV G
Sbjct: 504 CEVLSWNEQNPKASEERVVG 523


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 146 VPARVVRDISNYNISVSWQSSSC 78
           V  ++ RD  + N+S+S+ +SSC
Sbjct: 608 VVKQLERDTVSLNVSLSFDTSSC 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,205
Number of Sequences: 5004
Number of extensions: 9627
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)