Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M20
         (183 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1259 - 35810926-35811777                                         27   1.6  
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    27   2.8  
05_01_0555 + 4867494-4867577,4868987-4869607                           26   3.7  
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844...    26   3.7  
01_05_0626 + 23797278-23797618,23797629-23798097                       26   3.7  
06_02_0015 + 10599131-10600248,10601009-10602752                       25   6.5  
06_01_0467 + 3316023-3316370                                           25   6.5  
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155...    25   8.6  
04_01_0207 - 2520465-2521563,2521741-2522420                           25   8.6  

>01_06_1259 - 35810926-35811777
          Length = 283

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 179 PRPSLTLRADYVPARVVRDISNYNISVSWQSSSCLP 72
           PR   T+ A+  P R  R   N N+S + QS+ C P
Sbjct: 208 PRKDATIPANTQPKRRGRPPKNRNLSGNAQSAECTP 243


>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 179 PRPSLTLRADYVPARVVRDISNYNISVSWQSSSCLPGY 66
           P     LR   VPA  + D SNY  ++S+ SS  +  Y
Sbjct: 367 PVREAALRQYIVPALTIVDYSNYQATLSYSSSELVMLY 404


>05_01_0555 + 4867494-4867577,4868987-4869607
          Length = 234

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   GGADHRAIQAVTLLMALHVPQIAGKAARALP 95
           GG   R IQA+T+L+A  V   A   AR  P
Sbjct: 78  GGGGGRVIQAITMLVATAVTAQAAYRARREP 108


>04_04_0020 +
           22182649-22182829,22183900-22183999,22184415-22184491,
           22184718-22184809,22188655-22189767
          Length = 520

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 183 PPATLPDPPRGLRSRTRSTR 124
           PP  LP PP G RSR    R
Sbjct: 333 PPLPLPPPPNGKRSRADEGR 352


>01_05_0626 + 23797278-23797618,23797629-23798097
          Length = 269

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 152 DYVPARVVRDISNYNISVSWQSSSCLPGYL 63
           D++  R +RD+ +    + W+ S C  GYL
Sbjct: 18  DFLLTRRLRDLDDGGAPLRWRVSDCRGGYL 47


>06_02_0015 + 10599131-10600248,10601009-10602752
          Length = 953

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 18  RAIQA-VTL-LMALHVPQIAGKAARALPR-YTDIIVADVAYYACGNVIRAEGQGGSRE 182
           RA+QA +TL L+ L     AG    A    Y   +   V  Y+ GNV+     G SRE
Sbjct: 496 RALQAAMTLDLLGLMGAYAAGSCRSAAATVYVSALAVAVFVYSLGNVVAFTTMGRSRE 553


>06_01_0467 + 3316023-3316370
          Length = 115

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 177 ATLPDPPRGLRSRTR 133
           ATLP PPR LR R R
Sbjct: 89  ATLPTPPRRLRMRER 103


>09_06_0148 -
           21214460-21214561,21214993-21215339,21215428-21215538,
           21215673-21215835,21215921-21215999,21216110-21216228
          Length = 306

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 183 PPATLPDPPRGLRSRTRSTRHQQ 115
           PPA  P PP   R R R  R Q+
Sbjct: 200 PPAAPPPPPPPARGRRRRGRRQR 222


>04_01_0207 - 2520465-2521563,2521741-2522420
          Length = 592

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 137 RVVRDISNYNISVSWQSSSCLPGYLR 60
           +V+++ISNY + +  Q    LPG +R
Sbjct: 418 KVIKEISNYMLYLLLQHPDMLPGPIR 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,355,130
Number of Sequences: 37544
Number of extensions: 87894
Number of successful extensions: 270
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)