Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M20
(183 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13) 28 1.4
SB_54061| Best HMM Match : Neur_chan_memb (HMM E-Value=2.3e-32) 26 4.2
SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7) 26 5.6
SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065) 26 5.6
SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7) 25 7.4
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 25 7.4
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7) 25 7.4
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7) 25 7.4
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 25 7.4
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 25 7.4
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7) 25 7.4
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05) 25 7.4
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 25 7.4
SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24) 25 9.8
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
>SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)
Length = 479
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 27 QAVTLLMALHVPQIAGKAAR 86
Q+VT L A HV QIAG+A R
Sbjct: 93 QSVTQLTASHVKQIAGRAGR 112
>SB_54061| Best HMM Match : Neur_chan_memb (HMM E-Value=2.3e-32)
Length = 363
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 146 VPARVVRDISNYNISVSWQSSSCLPGYLRNMKRHQ*CDRLYSSVIST 6
V AR D+S Y IS W+ S +RN+ ++ C Y V T
Sbjct: 59 VNARNQSDLSKYTISGEWELKSA--PVVRNVVKYSCCKHPYIDVTYT 103
>SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 203 PQPLPEPKRPTRARTRPKRYE 223
>SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)
Length = 1171
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 66 IAGKAARALPRYTDIIVADVAYYACGNVIRAEGQG 170
+A K + +L R++D++ D A+Y G + A+G G
Sbjct: 974 LAAKLSISLLRHSDVVPCDKAFYEAG--LAAKGVG 1006
>SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 100
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 63 PQPLPEPRRPTRARTRPKRYE 83
>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 287
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 250 PQPLPEPRRPTRARTRPKRYE 270
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 222 PQPLPEPRRPTRARTRPKRYE 242
>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 214
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 177 PQPLPEPRRPTRARTRPKRYE 197
>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 203 PQPLPEPRRPTRARTRPKRYE 223
>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 625 PQPLPEPRRPTRARTRPKRYE 645
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 1176 PQPLPEPRRPTRARTRPKRYE 1196
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 1232 PQPLPEPRRPTRARTRPKRYE 1252
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 1235 PQPLPEPRRPTRARTRPKRYE 1255
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 638 PQPLPEPRRPTRARTRPKRYE 658
>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 269
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 232 PQPLPEPRRPTRARTRPKRYE 252
>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
Length = 848
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 811 PQPLPEPRRPTRARTRPKRYE 831
>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 500
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 180 PATLPDPPRGLRSRTRSTRHQ 118
P LP+P R R+RTR R++
Sbjct: 463 PQPLPEPRRPTRARTRPKRYE 483
>SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)
Length = 2278
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 48 ALHVPQIAGKAARALPRYTDIIV-ADVAYYACGNVIRAEGQGGSR 179
A+ Q+A L R T+ + A V A V+RA GQG SR
Sbjct: 398 AMEEDQVAPSKGTYLDRQTNKVGHASVGSVALPAVVRAGGQGSSR 442
>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1608
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 96 RYTDIIVADVAYYACGNVIRAEGQG 170
R ++ AD+A YA GN + G G
Sbjct: 96 RLAIVVAADIAVYAAGNARSSGGAG 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,545,303
Number of Sequences: 59808
Number of extensions: 84724
Number of successful extensions: 252
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 16,821,457
effective HSP length: 39
effective length of database: 14,488,945
effective search space used: 304267845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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