Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M20
         (183 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    29   0.44 
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    29   0.44 
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    27   1.8  

>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
            abnormal protein1 protein.
          Length = 1732

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 57   VPQIAGKAARALPRYTDIIVADVAYYACGNVIRAEG 164
            V ++  K + +L RYTDI+VAD  +Y  G   +  G
Sbjct: 1541 VQKLCLKQSLSLLRYTDILVADRIFYEAGAAAKDYG 1576


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
            transport protein protein.
          Length = 1737

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 57   VPQIAGKAARALPRYTDIIVADVAYYACGNVIRAEG 164
            V ++  K + +L RYTDI+VAD  +Y  G   +  G
Sbjct: 1546 VQKLCLKQSLSLLRYTDILVADRIFYEAGAAAKDYG 1581


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
            protein 12 protein.
          Length = 1280

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 15   HRAIQAVTLLMALHV-PQIAGKAARALPRYT 104
            HR+ + + + + +H  P +AG   + +PRYT
Sbjct: 1115 HRSCEPLMIRIGMHTGPCVAGVVGKTMPRYT 1145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,918,536
Number of Sequences: 27780
Number of extensions: 57874
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)