Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M20
         (183 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02400.1 68418.m00163 protein phosphatase 2C family protein /...    26   3.0  
At4g08290.1 68417.m01370 nodulin MtN21 family protein similar to...    26   4.0  
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi...    26   4.0  
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR...    25   5.3  
At4g14040.1 68417.m02169 selenium-binding protein, putative cont...    25   7.0  

>At5g02400.1 68418.m00163 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 674

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -2

Query: 182 LPRPSLTLRADYVPARVVRDISNYNISVSWQSSSCLPGYLRNMKRHQ*CDRLYSSVISTA 3
           LP P   LR+D++     R IS    SVS   S+ L G L +       D  YSS +S +
Sbjct: 49  LPSPESPLRSDHIQETTFRSIS--GASVSANPSTALSGALSSDS-----DCPYSSAVSAS 101


>At4g08290.1 68417.m01370 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 384

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 30  AVTLLMALHVPQIA-GKAARAL-PRYTDIIVADVAYYACGNVIRAEG 164
           AV L++  H    A G  AR   P YT I+ + + YY  G V++  G
Sbjct: 234 AVALVVERHPSGWAVGWDARLFAPLYTGIVSSGITYYVQGMVMKTRG 280


>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 691

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 72  GKAARALPRYTDIIVADVAYYACGNVIRAEGQGGS 176
           G A+R   R T+ +      Y  GNV+R+ G GG+
Sbjct: 173 GMASRTSSR-TETLCTGTGNYGHGNVVRSGGGGGT 206


>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1294

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 137 RVVRDISNYNISVSWQSSSCLPGYLRNM 54
           ++V+DIS+  +S SW  S  L G   +M
Sbjct: 165 KIVKDISDKLVSTSWDDSKGLIGMSSHM 192


>At4g14040.1 68417.m02169 selenium-binding protein, putative
           contains Pfam profile PF05694: 56kDa selenium binding
           protein (SBP56); similar to Putative selenium-binding
           protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
           similar to selenium binding protein (GI:15485232)
           [Arabidopsis thaliana]
          Length = 487

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 6   GADHRAIQAVTLLMALHVPQIAGKAARALPRYTDIIVADVAYYACGNVIRA 158
           G+ ++A+          VPQI GK+ RA P+   + +     YA  ++  A
Sbjct: 373 GSPYKAVGEDGNTYQFDVPQIKGKSLRAGPQMIQLSLDGKRLYATNSLFSA 423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,770,621
Number of Sequences: 28952
Number of extensions: 56587
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,070,560
effective HSP length: 40
effective length of database: 10,912,480
effective search space used: 218249600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)