Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M19
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    31   0.13 
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    29   0.31 
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    29   0.41 
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   1.2  
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    27   1.6  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   2.9  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   5.0  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   5.0  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.0  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    25   6.7  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   6.7  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.8  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   8.8  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   8.8  

>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 236 FIYKFYFNISGNKFRLVLETISRTHFVNSNVRYTCTHML 120
           F+YK    + G+K R++  T+SR H  +  VR   TH L
Sbjct: 52  FVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNL 90


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 54  NLTMKQYTRIISLKAIRSISNLKHMSTSVPDIRIYEVGPRDGLQNESKFVP 206
           N+  KQ  +II L  I S   LK++    P+IRI      +GL N    VP
Sbjct: 156 NMGCKQ-EQIIFLNVIASPEGLKNVHDRFPNIRIVTAVIDEGLDNNGYIVP 205


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -2

Query: 458 LRKTFRTSRENSNFFYITLFGN--AITL*VRHQNRIVDIVDLWKILHDLYTITHLLHPFW 285
           L  TF  +++ S  FY+ LFG+  A++  +     +V   +  K L  + T TH +  +W
Sbjct: 526 LMVTFEITKDRSVLFYLGLFGSLIAVSRSIIPDETLVFAPE--KALRRVITFTHYMPGWW 583

Query: 284 TD 279
           +D
Sbjct: 584 SD 585


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +3

Query: 57  LTMKQYTRIISLKAIRSISNLKHMSTSVPDIRIYEVGPRDGLQNESKFVPTDI 215
           +TMK +TR   + AIRS  N     T +  + I     RD L NE +F   DI
Sbjct: 112 VTMKSFTRFSHIVAIRSTGNCFSWDT-IERLNIKPKHWRD-LVNEEQFTRDDI 162


>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 236 FIYKFYFNISGNKFRLVLETISRTHFVNSNVRYTCTHML 120
           ++YK    + G+K R++  TI+R H  +  VR    H L
Sbjct: 52  YVYKSSKAVRGSKIRVIWGTIARPHGNSGAVRARFVHNL 90


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 377 VRHQNRIVDIVDLWKILHDLYTITHLLHPFWTDKACGFNILQ 252
           +R  +   DI  L  I +  YT+T  +HPF +   C  NIL+
Sbjct: 854 IRQASHATDIFALGCIFY--YTLTGGMHPFGSHYDCEGNILK 893


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 222 ELINKLVQAGLKNIESASFVSPKWMKQMSDGVEVMKNLPKVHNVNYPVLVPNLKGYS 392
           +L    V  G K +  A+  +  W     DG EV+ +L + HN+         +GYS
Sbjct: 262 KLAESAVHLGAKGLVLAAMGATSWT---DDGNEVISSLIREHNIPVVYSHRTAEGYS 315


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 222 ELINKLVQAGLKNIESASFVSPKWMKQMSDGVEVMKNLPKVHNVNYPVLVPNLKGYS 392
           +L    V  G K +  A+  +  W     DG EV+ +L + HN+         +GYS
Sbjct: 262 KLAESAVHLGAKGLVLAAMGATSWT---DDGNEVISSLIREHNIPVVYSHRTAEGYS 315


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 296 HPFWTDKACGFNILQPRLD*FIYKFYFNISGNKFRLVLETISRTHFVNSNVRYTCTHML 120
           +PFW  K+  F     +LD  +Y++  N+  N+ R   +T+   H +    ++ C H++
Sbjct: 451 YPFWHAKST-FK----QLDQELYEWEKNLP-NRLRYSRQTLLSYHMMGQGGQFACLHLI 503


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = +3

Query: 189 ESKFVPTDIKIELINKLVQAGLKNIESASFVSPKWMKQMSD-GVEVMKNLPKVHNVNYPV 365
           E  F P+D +I+  N L  +           +  W+   S   ++ +K LPKV   +Y +
Sbjct: 44  EMTFRPSDSQIDWSN-LSHSDFVQCGVYEDSTNTWLAGASKYKIDEIKTLPKVPRDHYII 102

Query: 366 LVPNLKGYSIAKQCNVEEVAIFPAGSEGFSQKNLNCS 476
           L  + +   IAK   V     F + SE    + L+ S
Sbjct: 103 LCDSSESNEIAKFTQVVHSFDFSSDSESAVVEQLHPS 139


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 183 QNESKFVPTDIKIELINKLVQAGLKNIESASFVSPKWMK 299
           Q ES+  P D       K   AGL+        SPKW +
Sbjct: 67  QPESQMSPKDKYTMFTRKTQGAGLQGFRKGVHKSPKWTR 105


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 99  IRSISNLKHMSTSVPDIRIYEVGPRDGLQNESKFVPTDIKIELINKLVQAGLKNIESASF 278
           +  IS   H+S S+P+   YE    +        +P  +++   N +   G  +I   SF
Sbjct: 97  LAGISFKDHLSASLPNKTSYEQADTNATSKSLVDLPVSLEVRGRNTVTFYGPTSIFGTSF 156

Query: 279 VS 284
            S
Sbjct: 157 TS 158


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 354 NYPVLVPNLK---GYSIAKQCNVEEVAIFPAGSEGFSQKNLNCS 476
           ++P+ V  L+    Y I    N E V+  P   +GF+   LNC+
Sbjct: 532 HFPLFVTMLRIKDPYRIPSGLNFEIVSFEPLKQDGFATLYLNCN 575


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 372 PNLKGYSIAKQCNVEEVAIFPAGSEGFSQKNLN 470
           P  K Y I ++ +V+ + I   G+ G+S  ++N
Sbjct: 587 PEEKAYPILRKHDVDYILIIYGGTLGYSSDDMN 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,303
Number of Sequences: 5004
Number of extensions: 35218
Number of successful extensions: 94
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)