Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M19
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40) 29 2.2
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26) 28 5.2
SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18) 28 5.2
SB_22310| Best HMM Match : Exo_endo_phos (HMM E-Value=0.12) 28 5.2
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0) 27 6.9
SB_40788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_18876| Best HMM Match : DUF1040 (HMM E-Value=2.9) 27 6.9
SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_4111| Best HMM Match : HMGL-like (HMM E-Value=2.4e-12) 27 9.1
>SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)
Length = 372
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/92 (21%), Positives = 41/92 (44%)
Frame = +3
Query: 198 FVPTDIKIELINKLVQAGLKNIESASFVSPKWMKQMSDGVEVMKNLPKVHNVNYPVLVPN 377
FVP + + +NK + ++ + + F + + D ++ + N P+ NVN +L N
Sbjct: 75 FVPIEKRTTSVNKYLSELMEGLSAKVFRTFNASLTLQDQLQKLTN-PE-DNVNAKILSYN 132
Query: 378 LKGYSIAKQCNVEEVAIFPAGSEGFSQKNLNC 473
++A CN + F + +N+ C
Sbjct: 133 RANRAVAILCNHQMPNCFDFSQPSWCDENVEC 164
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = -2
Query: 497 TAQTFLY*TVKILLRKTFRTSRENSNFFYITLFGNAITL*VRHQNRIVDIVDLWKILHDL 318
T +TF Y T I +FRTS E S+ + N TL + +++ I +L
Sbjct: 1219 TLRTFYYFTTLISSGNSFRTSSERSDSVRV-FSKNTWTLGPIRARDLTSVIENKSIYQEL 1277
Query: 317 YTITHLLHPFW 285
+ LL+ W
Sbjct: 1278 VAVKSLLNILW 1288
>SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 324 MKNLPKVHNVNYPVLVPNLKGYSIAKQCNVEEV 422
+K L K+HN+N V N K I+KQ EEV
Sbjct: 6 VKVLGKIHNINAKVHRSNKKTIEISKQITNEEV 38
>SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)
Length = 392
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 307 LICFIHFGLTKLADSIFFNPAWTNLFISSILISVGTN 197
L+CF F +T +AD++ +T LF +++ +N
Sbjct: 114 LLCFDEFQVTDIADAMILRRLFTALFDKGVVVIATSN 150
>SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18)
Length = 427
Score = 27.9 bits (59), Expect = 5.2
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +3
Query: 180 LQNESKFVPTDIKIELINKL-VQAGLKNIE-SASFVSPKWMKQMSDGVEVMKNLPKVHNV 353
L+N F +D+ I+++ + G+ ++ + F P + DG+ +K P
Sbjct: 87 LENCKGFQDSDVPIKMLQSCELNNGIIGLKGNQGFPGPMGL----DGIPGLKGFPGTPGD 142
Query: 354 NYPVLVPNLKGYSIAKQCNVEEVAIFPAGSEGFSQKN 464
VP +GY AK E+ A P GS G + N
Sbjct: 143 QGRQGVPGKRGYDGAKGREGEDGANGPPGSPGSANMN 179
>SB_22310| Best HMM Match : Exo_endo_phos (HMM E-Value=0.12)
Length = 633
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 250 PAWTNLFISSILISVGTNLDSF 185
P TN F+S+++ S+G LDSF
Sbjct: 201 PMQTNHFLSNLITSLGNELDSF 222
>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
Length = 680
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 252 LKNIESASFVSPKWMKQMSDGVEVMKNLPKVH-NVNYPVLVPN 377
+ +E +F + W+ + D M NL K+H + N V +P+
Sbjct: 309 INELERRAFQNGNWLSHLPDSFSQMANLTKLHLDENQVVCLPD 351
>SB_40788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +3
Query: 201 VPTDIKIELINKLVQAGLKNIESASFVSPKWMKQMSDGVEVMKNLPKVHN-----VNYPV 365
V + L NKLVQ GL + + S + P + +V +L HN +NYP
Sbjct: 34 VHQSVVARLRNKLVQRGLPVVYAPSHIIPIHVGDAGKCTQVSNDLMSKHNIYAQAINYPT 93
Query: 366 LVPNLKGYSIA 398
+ + IA
Sbjct: 94 VAKGEERLRIA 104
>SB_18876| Best HMM Match : DUF1040 (HMM E-Value=2.9)
Length = 725
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 199 NLDSFWRPSLGPTS*ILMSGTLVLICFKFEIDLMAFKLIILVYCFIV 59
+L S W SLG S + L+LI F + ++ F +++ V FIV
Sbjct: 666 SLRSSWLSSLGKVSHRVSIVALILIVFIVVVIVIVFIVVVTVIFFIV 712
>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +3
Query: 201 VPTDIKIELINKLVQAGLKNIESASFVSPKWMKQMSDGVEVMKNLPKVHN-----VNYPV 365
V + L NKLVQ GL + + S + P + +V +L HN +NYP
Sbjct: 483 VHQSVVARLRNKLVQRGLPVVYAPSHIIPIHVGDAGKCTQVSNDLMSKHNIYAQAINYPT 542
Query: 366 LVPNLKGYSIA 398
+ + IA
Sbjct: 543 VAKGEERLRIA 553
>SB_4111| Best HMM Match : HMGL-like (HMM E-Value=2.4e-12)
Length = 340
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 456 QKNLNCSVEEGLRRFTDV 509
+KN+NCS++E L RF V
Sbjct: 26 RKNINCSIKESLARFEAV 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,435
Number of Sequences: 59808
Number of extensions: 234779
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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