Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M19
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical...   131   2e-31
Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical pr...    34   0.069
Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical pr...    34   0.069
AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical
           protein Y71G12B.10 protein.
          Length = 318

 Score =  131 bits (317), Expect = 2e-31
 Identities = 62/128 (48%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
 Frame = +3

Query: 129 STSVPDIRIYEVGPRDGLQNESKFVPTDIKIELINKLVQAGLKNIESASFVSPKWMKQMS 308
           ST++   R+ EVG RDGLQ E KFVPT+IK+ELI++L + G + +E+ SFVSPKW+ Q++
Sbjct: 13  STAINRFRVVEVGARDGLQAEKKFVPTEIKVELIDRLSECGFQTVETTSFVSPKWVPQLA 72

Query: 309 DGVEVMKNLPKVHNVNYPVLVPNLKGYSIAKQCN-VEEVAIFPAGSEGFSQKNLNCSVEE 485
           D  E++K   +   V+YPVLVPN  G   A     VEE+A+F A S+ FS KN+N +VE+
Sbjct: 73  DHNEIVKKHRRFEGVSYPVLVPNAAGLKNALATGVVEEIAVFGAASDAFSLKNVNSNVED 132

Query: 486 GLRRFTDV 509
            L++  +V
Sbjct: 133 SLKKLMEV 140


>Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical
           protein M88.6b protein.
          Length = 594

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 84  ISLKAIRSISNLKHMSTSVPDIRIYEVGPRDGLQNESKFVPTDIKIELINKLVQAGLKNI 263
           I + A   +  ++ +  +  DIR+ + G  DG++N  K    +  +E+I K    GL ++
Sbjct: 166 IDVGAFEELKKVEELLLNENDIRVLKTGTFDGMKNLKKLTLQNCNLEIIQKGAFRGLNSL 225

Query: 264 E 266
           E
Sbjct: 226 E 226


>Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical
           protein M88.6a protein.
          Length = 610

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 84  ISLKAIRSISNLKHMSTSVPDIRIYEVGPRDGLQNESKFVPTDIKIELINKLVQAGLKNI 263
           I + A   +  ++ +  +  DIR+ + G  DG++N  K    +  +E+I K    GL ++
Sbjct: 166 IDVGAFEELKKVEELLLNENDIRVLKTGTFDGMKNLKKLTLQNCNLEIIQKGAFRGLNSL 225

Query: 264 E 266
           E
Sbjct: 226 E 226


>AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical
           protein Y87G2A.6 protein.
          Length = 629

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 291 WMKQMSDGVEVMKNLPKVHNVNYPVLVPNLKGYSIAKQCNVEE-VAIFPAGSEGFSQKNL 467
           W K+ S+GVE +K+  + H   +  +  N+ G  +A  C  ++ V +F    E F   N+
Sbjct: 80  WKKKHSEGVEFVKHF-RCHLSEFSHICANIDGTLLATVCEADKSVKVFDI--ENFDMINM 136


>AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical
           protein H34C03.2 protein.
          Length = 900

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 174 DGLQNESKFVPTDIKIELINKLVQAGLKNIESASFVSPKWMKQMSDGV 317
           +G Q+ESK    ++  +L+N++  A ++  E    +S KW   +   V
Sbjct: 19  EGSQDESKTPSREVLKKLLNEVEMAEMEENEMWYLISQKWWNSLIKAV 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,145,328
Number of Sequences: 27780
Number of extensions: 189120
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)