Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M19
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26800.3 68415.m03216 hydroxymethylglutaryl-CoA lyase, putati... 138 2e-33
At2g26800.2 68415.m03215 hydroxymethylglutaryl-CoA lyase, putati... 138 2e-33
At2g26800.1 68415.m03214 hydroxymethylglutaryl-CoA lyase, putati... 138 2e-33
At2g17520.1 68415.m02026 protein kinase family protein / Ire1 ho... 30 0.80
At3g62180.1 68416.m06986 invertase/pectin methylesterase inhibit... 30 1.1
At3g52115.1 68416.m05720 hypothetical protein 29 1.4
At4g18600.1 68417.m02755 expressed protein 29 2.4
At5g58540.3 68418.m07331 protein kinase family protein contains ... 27 5.6
At5g58540.2 68418.m07332 protein kinase family protein contains ... 27 5.6
At5g58540.1 68418.m07330 protein kinase family protein contains ... 27 5.6
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 27 5.6
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 27 7.4
At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative ... 27 9.8
At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative ... 27 9.8
At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative ... 27 9.8
At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative ... 27 9.8
>At2g26800.3 68415.m03216 hydroxymethylglutaryl-CoA lyase, putative
/ 3-hydroxy-3-methylglutarate-CoA lyase, putative /
HMG-CoA lyase, putative similar to SP|P35915
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
lyase) {Gallus gallus}; contains Pfam profile PF00682:
HMGL-like
Length = 355
Score = 138 bits (334), Expect = 2e-33
Identities = 68/150 (45%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Frame = +3
Query: 66 KQYTRIISLKAIRSISNLKHMSTSVPD-IRIYEVGPRDGLQNESKFVPTDIKIELINKLV 242
++Y+ + ISN +S +P ++I EVGPRDGLQNE VPT +K+ELI +LV
Sbjct: 142 QKYSTFSNENGTSHISN--KISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLV 199
Query: 243 QAGLKNIESASFVSPKWMKQMSDGVEVMKNLPKVHNVNYPVLVPNLKGYSIAKQCNVEEV 422
+GL +E+ SFVSPKW+ Q++D +VM + + PVL PNLKG+ A +EV
Sbjct: 200 SSGLPVVEATSFVSPKWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEV 259
Query: 423 AIFPAGSEGFSQKNLNCSVEEGLRRFTDVA 512
AIF + SE FS N+NC++EE L R+ VA
Sbjct: 260 AIFASASESFSLSNINCTIEESLLRYRVVA 289
>At2g26800.2 68415.m03215 hydroxymethylglutaryl-CoA lyase, putative
/ 3-hydroxy-3-methylglutarate-CoA lyase, putative /
HMG-CoA lyase, putative similar to SP|P35915
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
lyase) {Gallus gallus}; contains Pfam profile PF00682:
HMGL-like
Length = 468
Score = 138 bits (334), Expect = 2e-33
Identities = 68/150 (45%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Frame = +3
Query: 66 KQYTRIISLKAIRSISNLKHMSTSVPD-IRIYEVGPRDGLQNESKFVPTDIKIELINKLV 242
++Y+ + ISN +S +P ++I EVGPRDGLQNE VPT +K+ELI +LV
Sbjct: 142 QKYSTFSNENGTSHISN--KISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLV 199
Query: 243 QAGLKNIESASFVSPKWMKQMSDGVEVMKNLPKVHNVNYPVLVPNLKGYSIAKQCNVEEV 422
+GL +E+ SFVSPKW+ Q++D +VM + + PVL PNLKG+ A +EV
Sbjct: 200 SSGLPVVEATSFVSPKWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEV 259
Query: 423 AIFPAGSEGFSQKNLNCSVEEGLRRFTDVA 512
AIF + SE FS N+NC++EE L R+ VA
Sbjct: 260 AIFASASESFSLSNINCTIEESLLRYRVVA 289
>At2g26800.1 68415.m03214 hydroxymethylglutaryl-CoA lyase, putative
/ 3-hydroxy-3-methylglutarate-CoA lyase, putative /
HMG-CoA lyase, putative similar to SP|P35915
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
lyase) {Gallus gallus}; contains Pfam profile PF00682:
HMGL-like
Length = 433
Score = 138 bits (334), Expect = 2e-33
Identities = 68/150 (45%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Frame = +3
Query: 66 KQYTRIISLKAIRSISNLKHMSTSVPD-IRIYEVGPRDGLQNESKFVPTDIKIELINKLV 242
++Y+ + ISN +S +P ++I EVGPRDGLQNE VPT +K+ELI +LV
Sbjct: 107 QKYSTFSNENGTSHISN--KISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLV 164
Query: 243 QAGLKNIESASFVSPKWMKQMSDGVEVMKNLPKVHNVNYPVLVPNLKGYSIAKQCNVEEV 422
+GL +E+ SFVSPKW+ Q++D +VM + + PVL PNLKG+ A +EV
Sbjct: 165 SSGLPVVEATSFVSPKWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEV 224
Query: 423 AIFPAGSEGFSQKNLNCSVEEGLRRFTDVA 512
AIF + SE FS N+NC++EE L R+ VA
Sbjct: 225 AIFASASESFSLSNINCTIEESLLRYRVVA 254
>At2g17520.1 68415.m02026 protein kinase family protein / Ire1
homolog-2 (IRE1-2) contains protein kinase domain,
Pfam:PF00069; identical to Ire1 homolog-2 [Arabidopsis
thaliana] GI:15277139, cDNA Ire1 homolog-2 GI:15277138
Length = 841
Score = 30.3 bits (65), Expect = 0.80
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 368 QNRIVDIVDLWKILHDLYTITHLLHPFWTDKACGFNILQPRLD*FI 231
Q R VD+ L ++ YTIT HPF D NI++ ++D F+
Sbjct: 627 QTRAVDMFSLGCVI--FYTITGCKHPFGDDLERDVNIVKNKVDLFL 670
>At3g62180.1 68416.m06986 invertase/pectin methylesterase inhibitor
family protein low similarity to pollen-specific pectin
esterase from Brassica rapa subsp. pekinensis
GI:1620652; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 215
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 195 KFVPTDIKIELINKLVQAGLKNI-ESASFVSPKWMKQMSDGVEVMKNLPKVHNVNY 359
K VPT+ IELI LV A ++ +S +F+S K MSD N+NY
Sbjct: 56 KHVPTNDPIELIRALVAAAETSVKQSVTFLSGIKPKHMSDATATAVVNSCEKNLNY 111
>At3g52115.1 68416.m05720 hypothetical protein
Length = 588
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 327 KNLPKVHNVNYPVLVPNLKGYSIAKQCNVEEVAIFPAGSEGFSQKNLNCSVEEGLRR 497
K+ V +V NLKG KQC A+ P +EG K+L C EG+ R
Sbjct: 511 KSFKHVESVRKKAERENLKGIE-CKQCKKFYDAVHPE-NEGNGNKSLRCEHHEGVSR 565
>At4g18600.1 68417.m02755 expressed protein
Length = 1907
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +3
Query: 303 MSDGVEVMKNLPKVHNVNYPVL--VPN---LKGYSIAKQCNVEEV 422
+ D + K LP+ H VNYP L +P+ L G SIAK + E+
Sbjct: 518 LKDAIPAEKILPEEHLVNYPSLEAIPHEKILPGESIAKYPSFAEI 562
>At5g58540.3 68418.m07331 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 341
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Frame = +3
Query: 333 LPKVHNVNYPVLVPNLKGYSI-AKQCNVEEV-------AIFPAGSEGFSQKNL 467
L +HN+N P+L+ NL S+ + N +V +IFP+ EG S KNL
Sbjct: 175 LEHMHNLNPPILLSNLDSSSVYLTEDNAAKVSDFSVINSIFPS-KEGSSSKNL 226
>At5g58540.2 68418.m07332 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 242
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Frame = +3
Query: 333 LPKVHNVNYPVLVPNLKGYSI-AKQCNVEEV-------AIFPAGSEGFSQKNL 467
L +HN+N P+L+ NL S+ + N +V +IFP+ EG S KNL
Sbjct: 76 LEHMHNLNPPILLSNLDSSSVYLTEDNAAKVSDFSVINSIFPS-KEGSSSKNL 127
>At5g58540.1 68418.m07330 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 484
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Frame = +3
Query: 333 LPKVHNVNYPVLVPNLKGYSI-AKQCNVEEV-------AIFPAGSEGFSQKNL 467
L +HN+N P+L+ NL S+ + N +V +IFP+ EG S KNL
Sbjct: 318 LEHMHNLNPPILLSNLDSSSVYLTEDNAAKVSDFSVINSIFPS-KEGSSSKNL 369
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 203 NKFRLVLETISRTHFVNSN 147
N R ++ ISRTHFVNS+
Sbjct: 71 NSLRKLISLISRTHFVNSS 89
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 279 VSPKWMKQMSDGVEVMKNLP 338
VS KW K++ DG+E+ +LP
Sbjct: 4 VSVKWQKKVLDGIEIDVSLP 23
>At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 406
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 201 VPTDIKIELINKLVQAGLKNIESASFVSPKWMKQ--MSDGVEVMKNLPK 341
+P + INK+ AG+K++ AS + ++ G+E M N+PK
Sbjct: 86 IPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPK 134
>At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 201 VPTDIKIELINKLVQAGLKNIESASFVSPKWMKQ--MSDGVEVMKNLPK 341
+P + INK+ AG+K++ AS + ++ G+E M N+PK
Sbjct: 86 IPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPK 134
>At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 415
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 201 VPTDIKIELINKLVQAGLKNIESASFVSPKWMKQ--MSDGVEVMKNLPK 341
+P + INK+ AG+K++ AS + ++ G+E M N+PK
Sbjct: 86 IPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPK 134
>At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 201 VPTDIKIELINKLVQAGLKNIESASFVSPKWMKQ--MSDGVEVMKNLPK 341
+P + INK+ AG+K++ AS + ++ G+E M N+PK
Sbjct: 86 IPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPK 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,465,041
Number of Sequences: 28952
Number of extensions: 173394
Number of successful extensions: 480
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -