Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M18
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    31   0.087
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   2.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   2.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   3.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   3.3  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   5.7  
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    25   5.7  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   7.5  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   7.5  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    24   9.9  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    24   9.9  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    24   9.9  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 31.1 bits (67), Expect = 0.087
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 333 QRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 458
           Q S    T    + S  + S T+S   WP+T   +GAWS T+
Sbjct: 40  QNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 212 NWLKFNHFKSTIKDALIKLNDLVDESD 292
           N LKF H  ST+ D  +  +D VD  D
Sbjct: 609 NLLKFVHLVSTVDDLQVVEDDAVDRHD 635


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 176 NMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIRE 352
           NM + +VK K D W    HF        I+    VD++    NL  +   +  AE+ R+
Sbjct: 760 NMILRYVKSKADWWTSVAHFNR----ERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQ 814


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 418  GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS 299
            G++LSE +N  N +   + ++   DP+R    +H  +  S
Sbjct: 936  GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYS 975


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 442 APLRLLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCL--ESVHNV 311
           A LR  V     S ++NE+NE + I+  ++L+  LR L  E+  N+
Sbjct: 666 ARLRRSVSNKEDSSLINEANEEKEIVTNLLLS-ALRALISENAENI 710


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 122 ENDPIKMR---VRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESD 292
           EN  IK R   + + +Y++H    +DFV   + ++      K +   +  ++ D +DE  
Sbjct: 92  ENIDIKKREETLSQVFYNLHMLFGIDFVSTLVVSFPHITFLKESGNSSSNEIYDSIDEIP 151

Query: 293 P 295
           P
Sbjct: 152 P 152


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 105 LITRWMKTIRSRCESVKPIMICTR 176
           +IT+W+  + S C  VK +++  +
Sbjct: 103 VITKWLPEVSSNCPGVKLVLVALK 126


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 232 VVEFQPIIHFTLDEINCHVRVHIIIGFTDSHLDRIVF 122
           V EF+      +DEI+   ++ I++G T  +L  ++F
Sbjct: 74  VPEFERDASRVIDEIHSQGKIPIVVGGTHYYLQSLLF 110


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 302 NLPNIVHAFQTAERIR-EDHPDDDW 373
           N  N  HAFQTAE +   D  D DW
Sbjct: 262 NSHNHDHAFQTAEAVGVADSIDPDW 286


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
 Frame = -1

Query: 433  RLLVEGHNLSEIVNESNEVEPIIVRMVLTDPL---RCLES-VHNVRQVSVRIGFIDQIVQ 266
            R   EG  L + V   N  EP  ++++    +   R L + +HN  ++  +     + + 
Sbjct: 842  RRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLA 901

Query: 265  LDESILYCRLEVVEFQPIIHFTLDEINCHVRVHIIIGFTDS 143
            L E +   + ++ + + I+   LDE+N   RV   +GFT S
Sbjct: 902  LLEEVKDLKKKLSKARSIMQ--LDELNSRKRVLRRLGFTTS 940


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 134 IKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLP 310
           ++++V K    + T         K+ +        ST  +  I  +D VDE DP  N P
Sbjct: 43  LRIQVEKELESVKTKQISSSASSKVSS-NTIQELDSTTDEDEIPGSDTVDEEDPSLNAP 100


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 311 NIVHAFQTAERIREDHPDDDWFHLIG 388
           NI+ + +TAE IR   P D  FH+ G
Sbjct: 179 NILRSDKTAEEIR-SVPPDQLFHIAG 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,385
Number of Sequences: 5004
Number of extensions: 42798
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)