Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M18
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323... 112 2e-25
01_06_1183 - 35176780-35177266,35179631-35181093 29 1.4
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402... 29 1.8
04_03_0691 - 18756812-18756883,18757453-18757590,18758017-187583... 29 2.4
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 29 2.4
11_06_0437 - 23533218-23536382 28 3.2
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 3.2
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 28 4.3
01_01_0473 - 3478660-3480338,3480507-3480609 28 4.3
08_02_0517 - 18087769-18088026,18088148-18088519 27 5.6
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 27 7.4
07_03_1212 - 24913497-24913718,24914398-24914670 27 9.8
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 27 9.8
02_05_0881 + 32473208-32473575,32473742-32473826,32473991-324740... 27 9.8
>06_03_0471 +
21130839-21130869,21131013-21131127,21132228-21132309,
21132444-21132648,21133237-21133296,21133420-21133472,
21133589-21133711,21133844-21133913,21134012-21134090,
21134172-21134253,21134272-21134310
Length = 312
Score = 112 bits (269), Expect = 2e-25
Identities = 54/113 (47%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Frame = +2
Query: 137 KMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNI 316
K V + Y H N T DFV+ + + + + + I + + LN+ +D+SDPD ++P I
Sbjct: 58 KETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEFIDDSDPDLDMPQI 117
Query: 317 VHAFQTAERIREDHPDDDWFHLIGLIHDLGKVM---AFYEEPQWCVVGDTFAV 466
H QTAE IR+D PD+DW HL GLIHDLGKV+ +F E PQW VVGDTF V
Sbjct: 118 EHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTFPV 170
>01_06_1183 - 35176780-35177266,35179631-35181093
Length = 649
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 403 EIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQ 305
EIV E +E I+V + + DP C E + ++ Q
Sbjct: 188 EIVPERERLEEILVEVGINDPASCSEEIESLEQ 220
>12_01_0988 -
10039187-10039243,10039356-10039649,10039838-10040202,
10042916-10042931
Length = 243
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 203 KMDNWLKFNHFKST-IKDALIK--LNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDDW 373
K+ NW K N +KDA+ + ++D +D T L NI +F+ A + ++W
Sbjct: 72 KLANWEKSNRMCLIYVKDAISPEVIGGIIDSNDIKTYLANIEESFEFAPEAHANTLKEEW 131
>04_03_0691 -
18756812-18756883,18757453-18757590,18758017-18758308,
18758485-18758648,18759159-18759434,18759512-18759718,
18760303-18760475,18761978-18762139,18762561-18762720
Length = 547
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 370 IIVRMV-LTDPLRCLESVHNVRQVSVRI-GFIDQIVQLDESILYCR 239
I+VRM PL+CLE+V +Q R GF + ++ ++CR
Sbjct: 499 ILVRMPKCVHPLKCLETVTREKQKQTRTPGFCSNQFSVSKTWIFCR 544
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 28.7 bits (61), Expect = 2.4
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +2
Query: 23 RIPGVRYGPVASTPTRGEIRGQTVGSVPDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKG 202
++ V++G P G+T+ PD + ND IK+ D+ TN VDF+K
Sbjct: 125 KVRSVQFGQ-KGIPYLNTYDGRTI-RYPDPLIKANDTIKI-------DLETNKIVDFIKF 175
Query: 203 KMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIV-HAFQT 334
+ N + ++T + +IK + S ++ + + HAF T
Sbjct: 176 DVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFAT 220
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 359 PDDDWF-HLIGLIHDLGKVMAFYEEPQWCVVGD 454
PD F H+ IHDL + +AF+ Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 316 NVRQVSVRIGFIDQIVQLDESILYCRLEVVEFQPIIHFTLDEINC 182
N ++++ IG + +++ L+E Y L+ ++ I+H L EINC
Sbjct: 693 NNQKLTKCIGSVLKVLHLEEK--YESLDQMKLDSIVHLILHEINC 735
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +2
Query: 23 RIPGVRYGPVASTPTRGEIRGQTVGSVPDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKG 202
++ V++G P G+T+ PD + ND IK+ D+ TN VDF+K
Sbjct: 125 KVRSVQFGQ-KGIPYLNTYDGRTI-RYPDPIIKANDTIKI-------DLETNKIVDFIKF 175
Query: 203 KMDNWLKFNHFKSTIKDALIK 265
+ N + ++T + +IK
Sbjct: 176 DVGNVVMVTGGRNTGRVGVIK 196
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 221 KFNHFKSTIKDALIKLNDLVDESDPD 298
K++H KST++ +IKL D+V + D
Sbjct: 264 KYSHDKSTLETEIIKLQDIVKNFEGD 289
>08_02_0517 - 18087769-18088026,18088148-18088519
Length = 209
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +2
Query: 197 KGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPD 364
+G +D ++ ++H IK+ K+ + + P+ V +F+ ER+ E+ P+
Sbjct: 109 EGPLDEFIYYHHEMVLIKEFPGKVILFCEVAPPEGGETPFVPSFRVTERVMEEFPE 164
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +2
Query: 83 GQTVGSVPDYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALI 262
G+T+ PD + ND IK+ D+ TN VDF+K + N + ++T + +I
Sbjct: 160 GRTI-RYPDPLIKANDTIKI-------DLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVI 211
Query: 263 K 265
K
Sbjct: 212 K 212
>07_03_1212 - 24913497-24913718,24914398-24914670
Length = 164
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +2
Query: 95 GSVPDYTVDENDPIKMRVR----KTYYDMHTNMTVDFVK 199
G +PD +D+ DP++M R + +D++T VD V+
Sbjct: 78 GDLPDPLIDDLDPLEMEDREKLVRRMWDVYTRTGVDRVR 116
>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 78 YEDKPLEAFLITRWMKTIRSRCESVKPIM 164
YED PL+ T+ +TI++ C++++ I+
Sbjct: 1317 YEDMPLQDSQATQEQQTIQNLCDTLRTIL 1345
>02_05_0881 +
32473208-32473575,32473742-32473826,32473991-32474053,
32474199-32474241,32474737-32474796,32475001-32475301,
32475554-32475668,32476168-32476272,32476338-32476517
Length = 439
Score = 26.6 bits (56), Expect = 9.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 347 REDHPDDDWFHLIGLIHDLGK 409
R +PDD+WF+ + + + +G+
Sbjct: 372 RIPYPDDNWFYQVSVFYQIGR 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,145
Number of Sequences: 37544
Number of extensions: 273060
Number of successful extensions: 693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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