Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M18
(466 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31) 148 3e-36
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.029
SB_11581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 28 4.4
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 27 5.8
SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8) 27 5.8
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 27 5.8
>SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31)
Length = 203
Score = 148 bits (358), Expect = 3e-36
Identities = 64/107 (59%), Positives = 81/107 (75%)
Frame = +2
Query: 146 VRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHA 325
VR+TY MH TV+FV+ K+ W + + T+ +A+ L+ LVDESDPDT+LPN HA
Sbjct: 71 VRETYKLMHKYQTVEFVQQKIKKWGSLSKTEMTVMEAVFMLDALVDESDPDTDLPNSAHA 130
Query: 326 FQTAERIREDHPDDDWFHLIGLIHDLGKVMAFYEEPQWCVVGDTFAV 466
FQTAERIR DHPD DWF L+GL+HD+GKV+A + +PQWCVVGDTF V
Sbjct: 131 FQTAERIRADHPDKDWFQLVGLLHDMGKVLALWGDPQWCVVGDTFPV 177
>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 35.1 bits (77), Expect = 0.029
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 107 DYTVDENDPIKMRVRKTYYDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDE 286
+Y + NDP+ + + +T+ D+V + D+W+ F+H D K+N+ +
Sbjct: 259 NYGLSTNDPLSIGILLIILVFNTSNNNDYVSDESDDWVPFDH------DGRRKINNNYES 312
Query: 287 SDPDTN-LPNIVHAFQTAERIREDHP 361
D DT+ L ++ E + D P
Sbjct: 313 YDSDTSMLSDLDGESDEEEEVNRDAP 338
>SB_11581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 149 RKTYYDMHTNMTVDFVKGKMDNWLKFNH 232
R+ Y + +TN D+V + D+W+ F+H
Sbjct: 5 RRRYRNTNTNNKNDYVSDESDDWVPFDH 32
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 161 YDMHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAE 340
YD + N D V+ + F+ T+ A IK +DE ++ PN + E
Sbjct: 307 YDTNKNDEGDAVQHPVHTTTNSVCFQHTLHTAKIKAGH-IDEPTHSSSFPNRLQGTAQVE 365
Query: 341 RIREDHPDD 367
R+ + P++
Sbjct: 366 RLEQQQPEE 374
>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1415
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 38 RYGPVASTPTRGEIRGQTVGSVPDYTVDENDPIKMRVRK 154
+YG + +P RG +RG VG V + VDE D + + RK
Sbjct: 1365 KYGELIVSPNRGSVRG-IVGHV-ENKVDEYDDLIEKERK 1401
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 27.9 bits (59), Expect = 4.4
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +2
Query: 125 NDPIKMRVRKTYYD---MHTNMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDP 295
ND +K+++R D N + ++ K +N L ++ IKD + D D+S
Sbjct: 1226 NDIVKLKMRGMDDDGTEEMENQIREELEVKQENKLLQEQVENLIKDNALLQKDNTDKSTE 1285
Query: 296 DTNLP----NIVHAFQTAERIREDHPDDDW 373
N+ + + ++ E+ PDDDW
Sbjct: 1286 IQNMELEIKRLENIVSDLQKELENRPDDDW 1315
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 236 KSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDD 370
+S I L K+ + +D+ + +LP +VH E IR P D
Sbjct: 155 QSQIDSTLEKVGEKMDKYAKEADLPRLVHGSCLVEWIRHSVPKGD 199
>SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8)
Length = 282
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 99 AFLITRWMKTIRSRCESVKPIMICTRT*QLISSRVK 206
AF WM+TI S+ PI+ C R+ +L + +K
Sbjct: 88 AFSFVPWMETILFLNSSLNPIIYCVRSGELRGALLK 123
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 381 SLDSFTISERLWPSTRSRNGA--WSVTHSP 464
S +SFTI+ LWPS+ N W++ SP
Sbjct: 397 SNNSFTITSPLWPSSPPSNTTCNWAIESSP 426
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,811
Number of Sequences: 59808
Number of extensions: 325334
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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