Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M17
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0033 + 27820563-27823482,27823593-27823996 30 1.3
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 29 2.3
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641... 28 5.4
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 27 9.5
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368 27 9.5
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 27 9.5
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 9.5
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187... 27 9.5
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 56 GVTENVSLQDKRCRRSVCGAPEKGFIPFP 142
GV N++L+ R +CG+P G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 354 YAKDFETFYKSAAFARVHLNEGQFLYAYYIAVIQRT 461
Y KD FY + + + EG+FL ++Y+ + T
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQIAPST 732
>06_03_0499 +
21461608-21463427,21463517-21463627,21463867-21464143,
21464265-21464353,21464508-21464595,21464698-21464907,
21464985-21465110,21465429-21465620,21466532-21467188
Length = 1189
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 401 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 255
+S +G + FK+ +++E K + L EDG++++ K DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 379 TRVPLSL-VCT*MRDSSCTHIILQLSSALILMDSFYQLLMK 498
T+ P S V T + S+CTH QLSSA +L + +K
Sbjct: 65 TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELK 105
>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
Length = 601
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 14 PSSSGAHCPRAIQCGVTENVSLQDKRCRRSVCGAPEKGFIPFPRCRPS 157
PS + A + Q GV +VSL+ ++ + +K + PF C PS
Sbjct: 296 PSPTKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPS 343
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 436 IILQLSSALILMDSFYQLLMKFIHNSSL 519
++ LS A+ +MDS QL MKF+ L
Sbjct: 1076 LLENLSVAIFVMDSLRQLAMKFLEREEL 1103
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 329 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 213
S FP + E GE+ V GK+ D + SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538
>01_06_0006 -
25517892-25517935,25518156-25518276,25518598-25518733,
25519189-25519280,25519358-25519426,25519710-25519821,
25519897-25520015,25520302-25520355,25520811-25520891,
25520968-25521051,25521124-25521315,25521633-25521746,
25521832-25521978,25522066-25522302,25522762-25522810,
25522894-25523027,25523124-25523324,25523532-25523701,
25523773-25523875,25524198-25524361,25525015-25525055,
25525144-25525187
Length = 835
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +3
Query: 93 VDAVFVERQKKVLSLFQDVDQVNVDDEYYK-------IGKDYDVEANIDNYTNKKAVEEF 251
VD V+ Q+K + +++ + +++ Y+ I K E + Y NK +EF
Sbjct: 651 VDRVYRIGQEKNVIIYRLITSCTIEERIYEKQVSKEGIFKAATEERDFRRYINKLGYKEF 710
Query: 252 LKLYRIGY 275
LKL +G+
Sbjct: 711 LKLPEMGF 718
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,771
Number of Sequences: 37544
Number of extensions: 262717
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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