Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M16
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 119 9e-28
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 110 3e-25
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 98 2e-21
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 97 5e-21
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 75 2e-14
03_01_0174 + 1410322-1410345,1410458-1410760,1411914-1412034,141... 29 0.92
11_06_0129 - 20397179-20397537,20397749-20400497 28 2.1
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 28 2.8
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 27 4.9
03_05_0209 + 22014556-22015308 27 4.9
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 27 6.5
01_05_0572 + 23356737-23357705,23357811-23357957,23358048-23358443 26 8.6
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 119 bits (286), Expect = 9e-28
Identities = 56/96 (58%), Positives = 69/96 (71%)
Frame = +1
Query: 91 KLLNGNLWETDPELFNLITKEKKRQQAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPY 270
K LN L E DPE+ ++I EK RQ GLE+I SENFTSV V+Q + S + NKYSEG P
Sbjct: 32 KQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPG 91
Query: 271 QRYYGGNEFIDEIEILAQNRSLETYKLNPEEWGVNV 378
RYYGGNE+ID E L Q R+LE ++L+P +WGVNV
Sbjct: 92 ARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNV 127
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 110 bits (265), Expect = 3e-25
Identities = 49/86 (56%), Positives = 67/86 (77%)
Frame = +1
Query: 121 DPELFNLITKEKKRQQAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPYQRYYGGNEFI 300
DP + +L+ +EK+RQ++G+E+IASENFTS V++ L S L NKYSEGMP RYYGGN+ I
Sbjct: 16 DPLVHDLLEREKRRQRSGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDVI 75
Query: 301 DEIEILAQNRSLETYKLNPEEWGVNV 378
DEIE L ++R+L ++L+ WGVNV
Sbjct: 76 DEIENLCRDRALAAFRLDAASWGVNV 101
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 97.9 bits (233), Expect = 2e-21
Identities = 46/90 (51%), Positives = 61/90 (67%)
Frame = +1
Query: 109 LWETDPELFNLITKEKKRQQAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPYQRYYGG 288
L E DP++ L+ +E++RQ G+E+IASEN+ VL L S L NKYSEG+P RYY G
Sbjct: 114 LTEADPDVHELMERERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEGLPGARYYCG 173
Query: 289 NEFIDEIEILAQNRSLETYKLNPEEWGVNV 378
N+ ID IE L +R+L + L+P WGVNV
Sbjct: 174 NQHIDAIERLCCDRALAAFGLDPSRWGVNV 203
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 96.7 bits (230), Expect = 5e-21
Identities = 49/93 (52%), Positives = 60/93 (64%)
Frame = +1
Query: 100 NGNLWETDPELFNLITKEKKRQQAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPYQRY 279
N L E DP++ L+ E+ RQ G+E+IASENF VL+ L S L NKYSEG P RY
Sbjct: 141 NQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARY 200
Query: 280 YGGNEFIDEIEILAQNRSLETYKLNPEEWGVNV 378
YGGN+ ID IE L R+L + L+P WGVNV
Sbjct: 201 YGGNQHIDGIERLCHERALAAFGLDPACWGVNV 233
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = +1
Query: 217 LQCLSSCLHNKYSEGMPYQRYYGGNEFIDEIEILAQNRSLETYKLNPEEWGVNV 378
++ L S L NKYSEGMP RYYGGNE IDE+E L + R+L + L+PE WGVNV
Sbjct: 1 MEALGSPLTNKYSEGMPGSRYYGGNEVIDEVEELCRARALAAFHLDPEAWGVNV 54
>03_01_0174 +
1410322-1410345,1410458-1410760,1411914-1412034,
1412147-1412321,1412417-1412487,1412586-1413268
Length = 458
Score = 29.5 bits (63), Expect = 0.92
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 112 WETDPELFNLITKEKKRQQAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPYQRYYGGN 291
W T P FNL + G E++AS+N P++ L S + G Y + G+
Sbjct: 84 WLTGP--FNLTSHFTLFLDHGAEILASQNLEDWPLIAPLPSYGRGRDEPGPRYSNFIAGS 141
Query: 292 EFIDEI 309
D I
Sbjct: 142 NLTDVI 147
>11_06_0129 - 20397179-20397537,20397749-20400497
Length = 1035
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 79 TMNNKLLNGNLWETDPELFNLITKEKKRQQAGLEM-IASENFTSVPVL 219
T+ N +LNGN+ E +L +L T + R E+ I ENFT + L
Sbjct: 569 TLQNNMLNGNIPEQLSQLKSLQTLDFSRNNLSGEIPIFIENFTMLSYL 616
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 262 MPYQR--YYGGNEFIDEIEILAQNRSLETYKLNP 357
+PY+ +Y G ++ E+LA++R L +YK+ P
Sbjct: 126 VPYEETGWYDGQMWVKPPEVLARDRLLGSYKVKP 159
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 27.1 bits (57), Expect = 4.9
Identities = 31/120 (25%), Positives = 45/120 (37%)
Frame = +1
Query: 10 RKKYIFFLYFQFSIPVRNFNYTSTMNNKLLNGNLWETDPELFNLITKEKKRQQAGLEMIA 189
R FFL + S + Y NN N N++ + N + G I
Sbjct: 194 RDALCFFLDEEMSHKIGFVQYPQNYNNMTKN-NIYGNSLNVINHVEMRGLDSAGGCLYIG 252
Query: 190 SENFTSVPVLQCLSSCLHNKYSEGMPYQRYYGGNEFIDEIEILAQNRSLETYKLNPEEWG 369
+ F +L C Y E G+E IDEIE A++ + TY+L +WG
Sbjct: 253 TGCFHRREIL-C-GKKFSKDYKEDWGRGIKERGHENIDEIEEKAKSLATCTYELR-TQWG 309
>03_05_0209 + 22014556-22015308
Length = 250
Score = 27.1 bits (57), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 236 HELKHCNTGTDVKFS 192
H+LKHCN G+D + +
Sbjct: 6 HDLKHCNPGSDARIT 20
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 230 LKHCNTGTDVKFSDAIISSPAC-WRFFSFV 144
LKHCNT T+V I+ + C W S V
Sbjct: 598 LKHCNTETNVNAMAVILRNVCCSWSSSSIV 627
>01_05_0572 + 23356737-23357705,23357811-23357957,23358048-23358443
Length = 503
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 266 HIKGTMAEMNSLMK*KYWHKIGH 334
HIK + E N + K+W ++GH
Sbjct: 370 HIKYNVDESNGELNSKFWQEVGH 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,461,813
Number of Sequences: 37544
Number of extensions: 175280
Number of successful extensions: 347
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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