Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M16
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 268 YQRYYGGNEFIDEIEILAQNRSLE 339
           Y R   GN   +E+E  A+N  LE
Sbjct: 245 YDRNNNGNLEREELEQFAENEDLE 268


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 61  NFNYTSTMNNKLLNGNLWETDPELFNLITKEK 156
           N+NY +  NN   N N      + +N+I  E+
Sbjct: 91  NYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQ 122


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 124 PELFNLITKEKKRQQAGLEMIASENFT 204
           P   NL+ KE  +Q      ++SEN T
Sbjct: 111 PHPHNLVGKEACKQGVCTVEVSSENMT 137


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 124 PELFNLITKEKKRQQAGLEMIASENFT 204
           P   NL+ KE  +Q      ++SEN T
Sbjct: 111 PHPHNLVGKEACKQGVCTVEVSSENMT 137


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 199  FTSVPVLQCLSSC 237
            FT  PV+ C S C
Sbjct: 1703 FTMRPVVSCASGC 1715


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,330
Number of Sequences: 438
Number of extensions: 2416
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)