Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M15
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1171 - 26669487-26669854,26670769-26670868,26670970-266711... 62 4e-10
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 32 0.28
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858... 31 0.65
03_01_0075 - 618917-618980,619752-619818,619874-620029,620237-62... 30 1.1
10_03_0034 + 7257033-7257045,7257074-7257104,7257880-7258009,725... 29 2.0
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 29 3.4
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 28 6.0
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 27 8.0
>12_02_1171 -
26669487-26669854,26670769-26670868,26670970-26671161,
26672475-26672537,26673197-26673347,26673614-26673711,
26673936-26674136
Length = 390
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/66 (45%), Positives = 41/66 (62%)
Frame = +3
Query: 264 NLEDMERYLFRTGVTLTKLDELSVIHVAGTKGKGSTSAMCDSILRHHGFRTGFFSSPHLI 443
+L M R L R G T +H+AGTKGKGST+A +I+R G+ G ++SPHL+
Sbjct: 48 DLGRMRRLLRRLGDPHT---HFPAVHIAGTKGKGSTAAFLSNIMREQGYNVGCYTSPHLL 104
Query: 444 AVRERI 461
+RERI
Sbjct: 105 TIRERI 110
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 32.3 bits (70), Expect = 0.28
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Frame = +3
Query: 174 DAVHKLNKLQSNKSTIDQIRKDLRTGKRCTNLEDMERY-----LFRTGVTLTKLDELSVI 338
++V L KL S + ID +R ++ T+L+++ + F+ L KL EL V+
Sbjct: 651 ESVGLLTKLLSLRVDID-VRVSPGVIEKLTSLQELYLWPYSDDTFQFVKVLGKLRELRVL 709
Query: 339 HVAGTK--GKGSTSAMCDSILRHHGFRT 416
H K G+G TSA+ +S+ H +T
Sbjct: 710 HAKNLKLDGQGETSALLESLCNLHKIQT 737
>10_08_0548 -
18685114-18685230,18685615-18685724,18685779-18685802,
18686135-18686213,18686346-18686588,18686659-18686823,
18686960-18687037,18687185-18687231,18687319-18687379,
18687667-18687723,18688164-18688247,18689292-18689357,
18689447-18689574,18689693-18689885
Length = 483
Score = 31.1 bits (67), Expect = 0.65
Identities = 24/70 (34%), Positives = 35/70 (50%)
Frame = +3
Query: 162 SNYEDAVHKLNKLQSNKSTIDQIRKDLRTGKRCTNLEDMERYLFRTGVTLTKLDELSVIH 341
+ YE+ + ++ L + K +R D TG R E M +YL + + L V+H
Sbjct: 71 AEYEEVLGCISSLITQK-----VRAD--TGNRGNQWELMAKYLQILELE-EPIARLKVVH 122
Query: 342 VAGTKGKGST 371
VAGTKGK T
Sbjct: 123 VAGTKGKDKT 132
>03_01_0075 -
618917-618980,619752-619818,619874-620029,620237-620315,
620797-620961,621070-621147,621327-621391,621433-621517,
621864-621920,622303-622386,622568-622650,623104-623164,
623292-623357,623468-623595,623696-623741
Length = 427
Score = 30.3 bits (65), Expect = 1.1
Identities = 36/136 (26%), Positives = 59/136 (43%)
Frame = +3
Query: 162 SNYEDAVHKLNKLQSNKSTIDQIRKDLRTGKRCTNLEDMERYLFRTGVTLTKLDELSVIH 341
+ YED + +L+ L + K +R +G R + M YL + + + VIH
Sbjct: 22 AEYEDVMGRLSSLITQK-----VRA--HSGNRGNQWDLMAHYLQILELE-EPIARMKVIH 73
Query: 342 VAGTKGKGSTSAMCDSILRHHGFRTGFFSSPHLIAVRERIRLDGKIVSEEKFAQHFHRVY 521
VAGTKGK + + + + + +P+ E IR+D +SEEKF ++F +
Sbjct: 74 VAGTKGKNLNAT--NLHINVYLCNSLLLFAPNC----ESIRVD---ISEEKFLKYFWWCW 124
Query: 522 NXXXXXXXXXXXXPKY 569
N P Y
Sbjct: 125 NKLKEKTDDDIPMPTY 140
>10_03_0034 +
7257033-7257045,7257074-7257104,7257880-7258009,
7258423-7258751,7259923-7260026,7260138-7260476,
7261074-7261199,7261366-7261489,7261615-7261723,
7262171-7262251
Length = 461
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 210 KSTIDQIRKDLRTGKRCTNLEDMERYLFRTGVTLTKLDELSVIHVAGTKGKG 365
K DQ+R D+ + LED E Y V + DE ++ KGKG
Sbjct: 53 KGLQDQVRSDIMNSSYLS-LEDQEEYKMMGNVVFSSEDEGYKFYLGYAKGKG 103
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 156 VKSNYEDAVHKLNKLQSNKSTI-DQIRKD 239
V+ Y+DA KL+K+QS ST+ D+++ D
Sbjct: 457 VRKEYDDASSKLSKIQSRISTLTDKLKHD 485
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 289 RYLSISSKFVHLLPVLKSFLI*SIVDLFDC 200
R+LS+ VH+ P + F I ++DL++C
Sbjct: 569 RFLSLLRADVHMTPAITIFPILRVLDLYNC 598
>02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 463 RILSLTAIKCGDEKNPVRNP*CRSIESHIALVEPFPLVPA 344
+IL+L C E+ VRN + IAL+EP L+PA
Sbjct: 911 KILALLFNHCESEEEGVRNVVAECL-GKIALIEPRKLIPA 949
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,374,273
Number of Sequences: 37544
Number of extensions: 248923
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -