Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M15
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23978| Best HMM Match : ERF (HMM E-Value=2)                        132   1e-31
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         31   0.50 
SB_24331| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.086)         29   2.7  
SB_12735| Best HMM Match : PT (HMM E-Value=0.36)                       29   2.7  
SB_20239| Best HMM Match : RanGAP1_C (HMM E-Value=3)                   29   3.5  
SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)                     28   4.7  
SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)               28   4.7  
SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_39860| Best HMM Match : DBR1 (HMM E-Value=8.4)                      27   8.2  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)                   27   8.2  
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_23978| Best HMM Match : ERF (HMM E-Value=2)
          Length = 282

 Score =  132 bits (320), Expect = 1e-31
 Identities = 68/125 (54%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
 Frame = +3

Query: 153 SVKSNYEDAVHKLNKLQSNKSTIDQIRKDLRTGKRCTNLEDMERYLFRTGVT-LTKLDEL 329
           S +  YEDAV  LN LQ+N   + QIRK+ R   R  NL +M R++ R GV+ + +LDEL
Sbjct: 2   SEQRGYEDAVKALNTLQTNAQVLAQIRKE-RGRLRRDNLAEMRRFVERAGVSGMEQLDEL 60

Query: 330 SVIHVAGTKGKGSTSAMCDSILRHHGFRTGFFSSPHLIAVRERIRLDGKIVSEEKFAQHF 509
           SVIHV+GTKGKGST A  +SILR+ GF+TGF+SSPHLI VRERIR++GK +++  FA++F
Sbjct: 61  SVIHVSGTKGKGSTCAFTESILRNCGFKTGFYSSPHLIEVRERIRINGKPLAKNLFAKYF 120

Query: 510 HRVYN 524
            + ++
Sbjct: 121 FKCWD 125


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = +3

Query: 117 RSYLVN-KLVRMYSVKSNYEDAVHKLNKLQSNKSTIDQIRKDLRTGKRCTNLEDMERYLF 293
           +SY V  ++ R  SV +    A    N+++ NKS  +QIR   RT ++ TN     R   
Sbjct: 259 QSYQVTYQIRRTMSVTNQIRRAKELTNQIRRNKSVTNQIR---RTNEKVTNQIKRSRLPI 315

Query: 294 RTGVT----LTKLDELSVIHVAGT 353
             GVT      K +  S+I+++GT
Sbjct: 316 SLGVTSKQPYYKGNARSLIYISGT 339


>SB_24331| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.086)
          Length = 444

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 114 YRSYLVNKLVRMYSVKSNYEDAVHKLNKLQSNKSTIDQIRKDLR 245
           YR YL+N +     V    E  V  +N LQ+  +    +R+ LR
Sbjct: 170 YRKYLLNAVACRACVYEKLESKVEDMNALQTRPTPASHMRRGLR 213


>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
          Length = 1148

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 328 SSSNFVRVTPVLNRYLSISSKFVHLL 251
           SSS  + V P+L +YLS+S  F+H L
Sbjct: 234 SSSLVLSVLPLLTQYLSLSENFLHRL 259


>SB_20239| Best HMM Match : RanGAP1_C (HMM E-Value=3)
          Length = 346

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +3

Query: 126 LVNKLVRMYSVKSNYEDAVHKLNK--LQSNKSTIDQIRKDLRTGKRCTNLEDMERYLFRT 299
           LV+   +M+ +   Y++ +  L+K   QSN  T  ++   L   K C     + R+  RT
Sbjct: 196 LVDFKPKMHRIAKLYQNQLAMLDKEKFQSNDVTSKKLFYSLLRWKHCKRKSFVNRWKQRT 255

Query: 300 GVTLTKLDELSVIHVAGTKGK 362
           G  + + ++ S + +     K
Sbjct: 256 GHRIKRSEKTSKVRINNVNAK 276


>SB_37947| Best HMM Match : SAP (HMM E-Value=8e-07)
          Length = 389

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 93  LMCSSSLYRSYLVNKLVRMYSVKSNYEDAVHKLNKLQSNKSTIDQIR 233
           L+ +S  YR YL++ +V    V    E  V  LN LQ+  + +  +R
Sbjct: 139 LITTSRPYRKYLLDVVVCRTCVYEKLESKVEYLNALQTKPTLVSHMR 185


>SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)
          Length = 911

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +3

Query: 57  TSFEIV*STFDRLMCSSSLYRSYLVNKLVRMYSVKSNYEDAVHKLNKLQSNKSTIDQIRK 236
           +S E+V S  + L+   +L  S  V K VR +  +SN+  A  K N+L  +     QI K
Sbjct: 574 SSEEMVGSLAENLL--EALRESPQVGKKVRHFRTQSNWLLAYEKTNRLGKSLRENQQIGK 631

Query: 237 DLRTGKRCTNLE 272
            +   +R T  E
Sbjct: 632 KVNEVRRQTRTE 643


>SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 378 MCDSILRHHGFRTGFFSSPHLIAVRERIRLDGKIVSEEKF 497
           +CDSI++ H F  G  S  H+I+V E ++  G I    +F
Sbjct: 50  ICDSIVKQHSF--GNTSIDHIISVCECLQNSGNIERLARF 87


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 150 YSVKSNYEDAVHKLNKLQSNKSTIDQIRK 236
           Y+ ++NY+DA+   NK  + K T D ++K
Sbjct: 315 YAKQNNYKDAIKYYNKALAEKRTPDVLKK 343


>SB_39860| Best HMM Match : DBR1 (HMM E-Value=8.4)
          Length = 355

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 147 MYSVKSNYEDAVHKLNKLQSNK-STIDQIRKDLRTGKRC---TNLEDMERYLF 293
           +YS K + +D ++KLNK Q      +D++R ++   K C    N  D +R +F
Sbjct: 253 IYSSKKDTDDKLNKLNKAQEETGQKLDELRHEV-DSKVCMGDVNSTDRQRKIF 304


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 156 VKSNYEDAVHKLN-KLQSNKSTIDQIRKDLRTGKRCTNL 269
           VKSNYE A+  LN K  S  +  +  R++L   +RC NL
Sbjct: 627 VKSNYEKAIEDLNSKTVSKDADFEAERQELI--ERCKNL 663


>SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 210 KSTIDQIRKDLRTGKRCTNLEDMERYLFRTGVTLTKLDELSVI 338
           + T   +++  R  K+ TN++D++RYL   GV     D L V+
Sbjct: 130 RRTHSHLKQGTRPSKKVTNIKDVKRYL---GVATIAKDGLPVV 169


>SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)
          Length = 548

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 391 IESHIALVEPFPLVPATCITDSSSNFVRVTPVLNRYLSISSKFVHL 254
           +ES   L +  PLVP     D     VR   +L R L  ++K VH+
Sbjct: 265 LESFTLLTDHKPLVPLINCKDLDKTPVRCQRLLMRLLRFNAKAVHI 310


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 147 MYSVKSNYEDAVHKLNKLQSNK-STIDQIRKDLRTGKRC---TNLEDMERYLF 293
           +YS K + +D ++KLNK Q      +D++R ++   K C    N  D +R +F
Sbjct: 287 IYSSKKDTDDKLNKLNKAQEETGQKLDELRHEV-DSKVCMGDVNSTDRQRKIF 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,305,182
Number of Sequences: 59808
Number of extensions: 316805
Number of successful extensions: 761
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)