Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M14
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    28   0.71 
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   1.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.6  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   6.6  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.7  

>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 344 SRVYWVDAGKPTLPDDDPNRKEAFEDCARDYHCSIR 451
           +RVY+VD    T   DDP    A +     Y C  R
Sbjct: 378 ARVYFVDHNTKTTTWDDPRLPSALDQDVPQYKCDFR 413


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 167 YYLKKMTVIYTLGFLCLLSTVLGVHVSNLNESCIRCLCYV 286
           YY +++T ++  G+L    T     V N  E CIRCL ++
Sbjct: 246 YYARQVTYLHNNGYLRKCLTF----VPNSPERCIRCLQFI 281


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 118 NQGKADDLTITKDHRSTPVSSFRDDRALIISK 23
           NQ    D+T+TK   +   SS R+++ L +S+
Sbjct: 55  NQSTTADVTLTKSPNAYHASSAREEKDLQVSR 86


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 131 RKTSVTKLCNIVYYLKKMTVIYTLGFLCLL---STVLGVHVSNLNESC 265
           RKT+  +   +VYYLK + +++   F   +   + +L  +V  LNE C
Sbjct: 721 RKTAFIEPLFLVYYLKTLGILFFETFTSKIEGANRMLREYVDVLNEVC 768


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -1

Query: 156 QSLVTLVLRKLCLIREKLMTSR*QKITGRHQYLASATIEHLLYLKYS 16
           ++L T   + LC +RE+L T+R  K+  ++      T E++ +LK+S
Sbjct: 556 ETLKTQYEKNLCNLREQLKTAR-MKLADKYPQ-GDNTSENIDWLKHS 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,137
Number of Sequences: 5004
Number of extensions: 43966
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)