Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M14
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0042 + 295608-296222,298479-298925 32 0.23
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 31 0.71
06_01_0033 - 346273-347355 28 5.0
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 28 5.0
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 27 6.6
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 27 6.6
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891... 27 8.8
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 214 FIINSIRSARIKSQRILHPVSVLCNRM*FVTQMHWRLLRTFLHIPGILGRCGETNAA 384
+ + S+ ++ ++ Q +HPVSVL + + Q H FL +P LGR G A
Sbjct: 273 YSVASLAASLLRDQHRIHPVSVLASGFHGIPQDH----EVFLSLPARLGRAGVLGVA 325
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 30.7 bits (66), Expect = 0.71
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 341 ISRVYWVDAGKPTLPDDDPNRKEAFEDCARDYHCSI-RIIEN-HMATFGKDC 490
+ R+ W+ + PT+P+DD + + + E+ ++H + R I++ + F DC
Sbjct: 472 LERISWILSPSPTIPNDDISLRVSKEEDPENWHVQVFRSIDSGSLKGFPSDC 523
>06_01_0033 - 346273-347355
Length = 360
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 214 FIINSIRSARIKSQRILHPVSVLCNRM*FVTQMHWRLLRTFLHIPGILGRCGETNAA 384
+ + SI + ++ QR +HPVSVL + L FL +P LGR G A
Sbjct: 278 YSVASIAWSLLRDQRRIHPVSVLAKGLVRGVPADREL---FLSLPARLGRAGVLGVA 331
>03_02_0932 +
12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 330 DLSTYPGYTGSMRGNQRCLMTTLTEKKPLKTALGIITVLYG*LKII 467
+LSTY S R ++ C+ L + K L TAL +I VL G +I
Sbjct: 119 ELSTYKLECSSERTDKSCIKVWLEKHKKLHTAL-LIMVLIGTCMVI 163
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 95 EVISFSLIKHSFRKTSVTKLCNIVYYLKKMTVIYTLGFLCLLSTV--LGVHVSNLNES 262
EV S+ L+K + T + + +L+ ++V Y L CLL + + VH ++ ++S
Sbjct: 121 EVQSYILVKRTSENTPTALVADTEEFLRLVSVQYYLERQCLLKCIRRIFVHANDCSDS 178
>01_01_0690 -
5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +3
Query: 12 SRNTLDIISARSSRKLDTGV-DL*SFVIVRSS 104
S N+LDI+SAR+++K +GV + SF IV +S
Sbjct: 653 SVNSLDIVSARNAKKSLSGVQSVNSFEIVSTS 684
>03_04_0214 +
18688480-18688832,18688956-18688999,18689039-18689101,
18689883-18689956,18691526-18692017
Length = 341
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 240 TYQISTNPASGVCAM*PDVICHTNALEVIADLSTY 344
T+QISTNP + + +V N++EVI D +
Sbjct: 209 TFQISTNPTTEGLGIISEVPIRYNSVEVILDFHLF 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,999,745
Number of Sequences: 37544
Number of extensions: 260925
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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