Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M14
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_364| Best HMM Match : Tim17 (HMM E-Value=0.45)                      31   0.73 
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.96 
SB_42912| Best HMM Match : K_tetra (HMM E-Value=7.20267e-43)           29   2.2  
SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)                    28   3.9  
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)        27   9.0  

>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
 Frame = +2

Query: 77   VIFCYREVISFSLIKHSFRKTSVTKLCNIVYYLKKMTVIY-TLGFLCLLSTVLGVHVSNL 253
            + + YR  +S + I   +R    T   + +Y L  + V + +L   C   T  G  V N 
Sbjct: 748  IYYLYRLPVSTTCIDFLYRLPVSTTCIDFLYRLPVIRVDWRSLKRQCHRFTS-GRLVDNC 806

Query: 254  NESCIR---CLCYVTGCDLSHKCTGGYCGPFYISRVYWVDAGKPTLPDDDPNRKEAFEDC 424
               C +   C+     CD SH   G  C P+ IS     +A      DD P++    +D 
Sbjct: 807  VNGCSKHGKCIRGFCICDHSHYFNGAECAPYKISHRPCPEACAKRCTDDCPDKCCKVQDA 866

Query: 425  AR 430
             +
Sbjct: 867  TK 868


>SB_364| Best HMM Match : Tim17 (HMM E-Value=0.45)
          Length = 437

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 200 LGFLCLLSTVLGVHVSNLNESCIRCLCYVTGC 295
           +G  CLL +++G++  +    C R  CY + C
Sbjct: 123 IGVACLLVSLIGLYTPSYRSPCYRSACYRSAC 154


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 333  LSTYPGYTGSMRGNQRCLMTTLTEKKPLKTA 425
            L T P Y  S  GN+ C MT   +K P+K A
Sbjct: 1447 LITSPNYPESYPGNELCNMTIKVDKGPIKVA 1477


>SB_42912| Best HMM Match : K_tetra (HMM E-Value=7.20267e-43)
          Length = 523

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 344 SRVYWVDAGKPTLPDDDPNRKEAFED 421
           +R+YW+      LP+ DPN  E F D
Sbjct: 307 TRLYWITENGTQLPEFDPNTSEFFFD 332


>SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 323 YCGPFYISRVYWVDAGKPTLPDDDPNRKEAFEDCARDYHCSIRIIENH 466
           YC P   SR  W+ +G PT   D  + K  FED A  + C + + +NH
Sbjct: 204 YCWPIDKSRTTWISSGGPT---DLISNKWMFEDPA--FSC-LAVKKNH 245


>SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)
          Length = 542

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 418 FKGFFSVRVVIRQRWFPRIDPVYPGY-VERSAITSS 314
           +KGF SVR+ I+ + +P  D    G+ ++RS   SS
Sbjct: 174 WKGFLSVRITIKDQDYPSRDDFVDGFLIQRSLPPSS 209


>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
          Length = 515

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 272 CLCYVTGCDLSHKCTGGYCGPFYISRVY 355
           C  Y + CD S       CG FYI  +Y
Sbjct: 78  CFRYSSCCDYSQNVNVRNCGGFYIYEIY 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,314
Number of Sequences: 59808
Number of extensions: 353917
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)