Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M13
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   1.3  
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   2.3  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    27   7.2  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    27   9.5  

>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 197 HTFMPSALDFYQTALRDPAFYQLYHRIVG-YINAFKHYLKPYPQEKLHFVGVQINDVVVE 373
           H    S  DF +     P F +L+H I   Y+     ++KPY   K+ ++ + + ++  E
Sbjct: 641 HIIDHSTDDFLERWFPIPCFLRLFHMITDYYLLQLPKWVKPY-LTKMAYLSINLREIKKE 699

Query: 374 KLVTFFD 394
            + T  D
Sbjct: 700 DMETLGD 706


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 24  NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 155
           NR+ R L++  +++    E I +    CMKK+   ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 99  PICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLT 224
           PICM       +         MC V HL+H +  P C   LT
Sbjct: 61  PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLT 102


>04_04_1189 +
           31586991-31587291,31587358-31587397,31587449-31587534,
           31587535-31588097,31588250-31589913,31589956-31590066,
           31590152-31591181,31591234-31591406,31591535-31591814,
           31592275-31592331
          Length = 1434

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 287 INAFKHYLKPYPQEKLHFVGVQINDVVVEKLVTFFDYSQ 403
           IN+ ++ L PY    L F+G    DVV+ + +T F + Q
Sbjct: 639 INSLQNSLNPYHLRYLEFIGA-YGDVVLPQALTSFYHLQ 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,513,828
Number of Sequences: 37544
Number of extensions: 228992
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)