Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M13
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.20 
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.45 
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          30   1.0  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   1.8  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   5.6  
SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.4  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    27   7.4  
SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)               27   9.7  
SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)          27   9.7  

>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 215 ALDFYQTALRDPAFYQLYHRIVGYINAFKHYLKPYPQEKLHFVGVQINDVVVEKLVTFFD 394
           AL +   ALR P   ++Y   +  ++ FK  LK YP    H   +       + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239

Query: 395 YSQ 403
           Y Q
Sbjct: 240 YGQ 242


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 156  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 248
            L+ CS+Q L  +T T   P+R++F++PH  T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +3

Query: 177 HLNHSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*SLILKRNFISSAFKS 356
           +L HST T S    L  T     T  +++++T  + TLTH +IT S I            
Sbjct: 26  NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84

Query: 357 MMLSLRN*SHS-LTIANLMPLTV 422
           + L+    +HS LT + L   T+
Sbjct: 85  LTLTYSTLTHSTLTHSTLTHSTL 107



 Score = 28.3 bits (60), Expect = 3.2
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +3

Query: 141 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYITGLWVTLTHSSIT*S 314
           L  L+L   ++ HL   +ST T S    LT T  H     +++Y T    TLTHS++T S
Sbjct: 52  LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105

Query: 315 LILKRNFISSAFKSMMLSLRN*SH 386
            +       S      L+  N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129



 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 255 SISYITGLWVTLTHSSIT*SLILKRNFISSAFKSMMLSLRN*SHS-LTIANLMPLTV 422
           ++++ T + +TLTHS++T   +   N   S      L+  N +HS LT + L  LT+
Sbjct: 1   TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57



 Score = 27.5 bits (58), Expect = 5.6
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +3

Query: 144 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYITGLWVTLTHSSIT* 311
           + L+ +  +   L H T T S    LT T     H    H +++++T  + TLTHS++T 
Sbjct: 40  LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99

Query: 312 SLILKRNFISSAFKSMMLSLRN*SHS 389
           S +       S      ++    +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +2

Query: 5    LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 136
            L+KGKF+     S  K ID   E+   F+G+ W ++ DL  +++E  K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 20  FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 160
           FE Y    ++ DEKA  ++  Y ++ A  +  E     +RSY  + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184


>SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 92  ENADLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYH 271
           +N++ Y + + K  Q  YE  A+  L +     D    +PS     Q AL     Y LYH
Sbjct: 143 DNSEEYIDFLLKSEQSLYEDFAKRFLESGYFDCDLGKSVPSVHILRQDALSAIPIYALYH 202

Query: 272 R 274
           +
Sbjct: 203 Q 203


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 2   SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 139
           +LQ+G   S   K+++    A+   G+  Q++ ++ E E  +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544


>SB_43460| Best HMM Match : Keratin_B2 (HMM E-Value=0.68)
          Length = 306

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 167 LGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYHRIVGYINAF 298
           +G   +   +  F+P+ L F  T+  D  FY   +R +G IN++
Sbjct: 1   MGVTLRRAKEKRFIPADLSFGITSFYDVYFYSPRNRSLGIINSY 44


>SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)
          Length = 361

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 208 HEGVLVEWFRCCTEHMASDNFIRSLIILC 122
           H+GV++      T H  +DNFI    I+C
Sbjct: 93  HQGVVISRDDISTSHEEADNFIVQQAIMC 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,713,370
Number of Sequences: 59808
Number of extensions: 278205
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)