Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M13
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-23|AAP31422.1|  187|Caenorhabditis elegans Hypothetical...    30   0.92 
AC084158-22|AAM15623.1|  214|Caenorhabditis elegans Hypothetical...    30   0.92 
AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical...    30   0.92 
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    28   2.8  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   2.8  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    28   3.7  
AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    27   4.9  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58761-2|AAB00713.1|  308|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF022972-4|AAC48236.2|  528|Caenorhabditis elegans Udp-glucurono...    27   6.5  
Z83102-2|CAB05464.1|  349|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81553-6|CAB04495.1|  388|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC084158-23|AAP31422.1|  187|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7c protein.
          Length = 187

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 108 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 257
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150


>AC084158-22|AAM15623.1|  214|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7b protein.
          Length = 214

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 108 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 257
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177


>AC084158-21|AAK68581.1|  271|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.7a protein.
          Length = 271

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 108 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 257
           ++K  QR+ +D+ +  L +C  +H+NH+  TP  P + T     FET  S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 114 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 272
           K+ Q+  ++L K++       H + STS+   P  +TF+ P FE   + S +T
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 183 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 308
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 183 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 308
           +HS STP  P+R + T  H  + ++ISY T  G  V +T  S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 50  HDEKAINFVGNYWQENADLYEEEV 121
           HDE A+N    Y+Q + DL E++V
Sbjct: 75  HDELAVNNADEYFQGDVDLSEQQV 98


>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
 Frame = -1

Query: 382 D*FLNDNIIDLNADEMKFLLRIRLQVMLECVNVTHNPVI*L----IECRVSKCGLVKV-- 221
           D F   N+ ++N + MK   ++    + E +N    P   L    +EC   K  L+    
Sbjct: 256 DYFFGLNVTNVNMESMKLKTQLHHNFVTEMINCLGTPFRRLQIDDVECAALKIILLLTPS 315

Query: 220 --KRT---GHEGVLVEWFRCCTEHM 161
             KR    G EGVL   +  CTE +
Sbjct: 316 CTKRAIYAGQEGVLAGLYTKCTEEL 340


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
           protein F48F5.1 protein.
          Length = 1291

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 24  NRMARKLISTMKRQLTLSETIG--KRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTS 197
           +++   +  T K     SET+   K+ P  MKK ++ +  +L K S ++     ++HS S
Sbjct: 498 DKLLESVQQTAKSVSQFSETLASVKKIPDAMKKNVKNVTLELNKRSESLNQSDAISHSAS 557


>U58761-2|AAB00713.1|  308|Caenorhabditis elegans Hypothetical
           protein C01F1.5 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 182 KPFDKHTFMPSALDFYQTALRDPAFYQLYHR 274
           KP  K  F PS  DF +  LRD AF Q+  R
Sbjct: 56  KPVQKVYFWPSLTDFEKNVLRD-AFAQIGRR 85


>AF022972-4|AAC48236.2|  528|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein37 protein.
          Length = 528

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 278 VGYINAFKHYLKPYPQEKLHFVGVQINDVVVEKLVT 385
           + Y+   KH +   P EKL   G Q+ DV + +  T
Sbjct: 62  INYVKHTKHVIHLEPSEKLERYGNQMEDVDISRFWT 97


>Z83102-2|CAB05464.1|  349|Caenorhabditis elegans Hypothetical
           protein C54C8.2 protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 26  SYGKKIDFHDEKAINFV 76
           S+G  +DFH +KA+N++
Sbjct: 53  SFGLFVDFHSQKALNYI 69


>Z81553-6|CAB04495.1|  388|Caenorhabditis elegans Hypothetical
           protein F56H6.6 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 26  SYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDY 133
           S+G  +D+H +KA+ +V    Q + + + E+VT  Y
Sbjct: 92  SFGMFVDYHSQKALEYVAMLHQCDKE-FGEKVTVHY 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,594
Number of Sequences: 27780
Number of extensions: 213547
Number of successful extensions: 689
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)