Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M10
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   2.3  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   7.0  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   7.0  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 181 GNELKRAQRSGHLVDLR**ENN 116
           G ELK+  RSG ++D R  ENN
Sbjct: 93  GAELKKRNRSGAIIDRRFGENN 114


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 314 FLLTYLRISHKKILPVFLY 370
           FLL YLRIS  + LP+ ++
Sbjct: 129 FLLAYLRISIDRYLPIAIW 147


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 223 LVCSRYEYCLKKPQGNELKRAQR 155
           L C++Y+  LK P+G E+    +
Sbjct: 653 LACAKYKILLKDPKGREVNAGDK 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,092
Number of Sequences: 5004
Number of extensions: 37819
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)