Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M10
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0482 - 3714442-3715593                                           28   3.9  
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345...    27   9.1  

>11_01_0482 - 3714442-3715593
          Length = 383

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 112 FHCFPISVNQPNGPSVEHVLVH--CLEVSLNNTRNEN 216
           FHC P S ++ +GPS+  V  H   + V ++  + EN
Sbjct: 77  FHCSPCSKHRVHGPSINVVAAHGDSVLVEMHYEKGEN 113


>10_01_0315 -
           3454846-3455465,3455562-3455663,3455828-3455954,
           3456698-3456727,3456828-3456877,3457004-3457106
          Length = 343

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 61  GKQYGRQRCYGVCIT*LFHCFPISVNQPNGPSV 159
           G  YG+    GVC+      FP ++NQPN PSV
Sbjct: 297 GAVYGKHS--GVCLE--TQGFPNAINQPNFPSV 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,645,765
Number of Sequences: 37544
Number of extensions: 191834
Number of successful extensions: 256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)