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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M09
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    96   3e-21
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    95   5e-21
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.8  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    27   1.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   5.6  
SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo...    25   5.6  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   7.3  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   9.7  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    24   9.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   9.7  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 47/74 (63%), Positives = 56/74 (75%)
 Frame = -1

Query: 254 TEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQST 75
           TE  T++EIRNFLGE+  R +K  PGVTV  S   KDE+IIEGNSLE+V  SAA I+Q  
Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQIC 163

Query: 74  TVKNKDIRKFLDGL 33
            V+NKDIRKFLDG+
Sbjct: 164 NVRNKDIRKFLDGI 177


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 95.1 bits (226), Expect = 5e-21
 Identities = 46/74 (62%), Positives = 56/74 (75%)
 Frame = -1

Query: 254 TEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQST 75
           TE  T++EIRNFLGE+  R +K  PGVTV  S   KDE+I+EGNSLE+V  SAA I+Q  
Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQIC 163

Query: 74  TVKNKDIRKFLDGL 33
            V+NKDIRKFLDG+
Sbjct: 164 NVRNKDIRKFLDGI 177


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -1

Query: 164 NSPKQKDELIIEGNSLEDVPSSAALIQQS 78
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 179 GVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQSTTVKNKDIRKFLDGLIS 27
           G  + +S  Q+ +   E   + ++P S + +++STT+ N  +   LD L++
Sbjct: 62  GGNIHSSSNQQRQKNSEAPRINEIPPSTSSVEKSTTIPNSSV--VLDHLLN 110


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 115 SNEFPSMISSSFCLGELTTVTPGAIFTLLMYF 210
           SN   + I  SFC   LTT+ P   ++ L+YF
Sbjct: 635 SNPSATFIDFSFC--PLTTIDPAFSYSNLVYF 664


>SPBC83.06c |||mitochondrial ribosomal protein subunit
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 59

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 351 IRRIPSLFILCFKYQRHKS 295
           +RR   L++LC K+ RHK+
Sbjct: 38  VRRKGRLYVLCKKHPRHKT 56


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 DNCHTRCHFYPPDV 206
           DNC  R H +PPD+
Sbjct: 128 DNCLWRLHKFPPDI 141


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 173  TVVNSPKQKDELIIEGNSLEDVPSSAALIQQSTTVKN 63
            +V+N    K EL +EG  L+ V ++  ++   T+  +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 310 STAQILSFSLVPNSARGSPLRETQLLRSVTSL 215
           STA+ +SF+  P S    P+ E  LL ++T L
Sbjct: 274 STAKSISFNPFPVSFLNDPIPEEILLAAMTRL 305


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 ELGTSSNEFPSMISSSFCLGELTTVTPGAI 189
           EL TS+   PS   S  CL E+ T+ PG +
Sbjct: 654 ELLTSTFLSPSA-ESQVCLAEIKTIRPGLV 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,722
Number of Sequences: 5004
Number of extensions: 38731
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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