BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_M09 (458 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 96 3e-21 SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 95 5e-21 SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.8 SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 27 1.8 SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 5.6 SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo... 25 5.6 SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 7.3 SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 24 9.7 SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 24 9.7 SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 24 9.7 >SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosaccharomyces pombe|chr 3|||Manual Length = 189 Score = 95.9 bits (228), Expect = 3e-21 Identities = 47/74 (63%), Positives = 56/74 (75%) Frame = -1 Query: 254 TEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQST 75 TE T++EIRNFLGE+ R +K PGVTV S KDE+IIEGNSLE+V SAA I+Q Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQIC 163 Query: 74 TVKNKDIRKFLDGL 33 V+NKDIRKFLDG+ Sbjct: 164 NVRNKDIRKFLDGI 177 >SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccharomyces pombe|chr 1|||Manual Length = 190 Score = 95.1 bits (226), Expect = 5e-21 Identities = 46/74 (62%), Positives = 56/74 (75%) Frame = -1 Query: 254 TEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQST 75 TE T++EIRNFLGE+ R +K PGVTV S KDE+I+EGNSLE+V SAA I+Q Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQIC 163 Query: 74 TVKNKDIRKFLDGL 33 V+NKDIRKFLDG+ Sbjct: 164 NVRNKDIRKFLDGI 177 >SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual Length = 1140 Score = 26.6 bits (56), Expect = 1.8 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = -1 Query: 164 NSPKQKDELIIEGNSLEDVPSSAALIQQS 78 +SPK+K +L ++G L+ + + +LI+QS Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277 >SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23|Schizosaccharomyces pombe|chr 2|||Manual Length = 476 Score = 26.6 bits (56), Expect = 1.8 Identities = 13/51 (25%), Positives = 28/51 (54%) Frame = -1 Query: 179 GVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQSTTVKNKDIRKFLDGLIS 27 G + +S Q+ + E + ++P S + +++STT+ N + LD L++ Sbjct: 62 GGNIHSSSNQQRQKNSEAPRINEIPPSTSSVEKSTTIPNSSV--VLDHLLN 110 >SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pombe|chr 2|||Manual Length = 1692 Score = 25.0 bits (52), Expect = 5.6 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 115 SNEFPSMISSSFCLGELTTVTPGAIFTLLMYF 210 SN + I SFC LTT+ P ++ L+YF Sbjct: 635 SNPSATFIDFSFC--PLTTIDPAFSYSNLVYF 664 >SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizosaccharomyces pombe|chr 2|||Manual Length = 59 Score = 25.0 bits (52), Expect = 5.6 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = -3 Query: 351 IRRIPSLFILCFKYQRHKS 295 +RR L++LC K+ RHK+ Sbjct: 38 VRRKGRLYVLCKKHPRHKT 56 >SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces pombe|chr 3|||Manual Length = 296 Score = 24.6 bits (51), Expect = 7.3 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +3 Query: 165 DNCHTRCHFYPPDV 206 DNC R H +PPD+ Sbjct: 128 DNCLWRLHKFPPDI 141 >SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1405 Score = 24.2 bits (50), Expect = 9.7 Identities = 10/37 (27%), Positives = 20/37 (54%) Frame = -1 Query: 173 TVVNSPKQKDELIIEGNSLEDVPSSAALIQQSTTVKN 63 +V+N K EL +EG L+ V ++ ++ T+ + Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264 >SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 315 Score = 24.2 bits (50), Expect = 9.7 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 310 STAQILSFSLVPNSARGSPLRETQLLRSVTSL 215 STA+ +SF+ P S P+ E LL ++T L Sbjct: 274 STAKSISFNPFPVSFLNDPIPEEILLAAMTRL 305 >SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1238 Score = 24.2 bits (50), Expect = 9.7 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 100 ELGTSSNEFPSMISSSFCLGELTTVTPGAI 189 EL TS+ PS S CL E+ T+ PG + Sbjct: 654 ELLTSTFLSPSA-ESQVCLAEIKTIRPGLV 682 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,947,722 Number of Sequences: 5004 Number of extensions: 38731 Number of successful extensions: 101 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 101 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 172312850 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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