Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M09
(458 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 96 3e-21
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 95 5e-21
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.8
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 27 1.8
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 5.6
SPBC83.06c |||mitochondrial ribosomal protein subunit L36|Schizo... 25 5.6
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 7.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 24 9.7
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 24 9.7
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 24 9.7
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 95.9 bits (228), Expect = 3e-21
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = -1
Query: 254 TEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQST 75
TE T++EIRNFLGE+ R +K PGVTV S KDE+IIEGNSLE+V SAA I+Q
Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQIC 163
Query: 74 TVKNKDIRKFLDGL 33
V+NKDIRKFLDG+
Sbjct: 164 NVRNKDIRKFLDGI 177
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 95.1 bits (226), Expect = 5e-21
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = -1
Query: 254 TEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQST 75
TE T++EIRNFLGE+ R +K PGVTV S KDE+I+EGNSLE+V SAA I+Q
Sbjct: 104 TENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQIC 163
Query: 74 TVKNKDIRKFLDGL 33
V+NKDIRKFLDG+
Sbjct: 164 NVRNKDIRKFLDGI 177
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -1
Query: 164 NSPKQKDELIIEGNSLEDVPSSAALIQQS 78
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = -1
Query: 179 GVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQSTTVKNKDIRKFLDGLIS 27
G + +S Q+ + E + ++P S + +++STT+ N + LD L++
Sbjct: 62 GGNIHSSSNQQRQKNSEAPRINEIPPSTSSVEKSTTIPNSSV--VLDHLLN 110
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 115 SNEFPSMISSSFCLGELTTVTPGAIFTLLMYF 210
SN + I SFC LTT+ P ++ L+YF
Sbjct: 635 SNPSATFIDFSFC--PLTTIDPAFSYSNLVYF 664
>SPBC83.06c |||mitochondrial ribosomal protein subunit
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 59
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 351 IRRIPSLFILCFKYQRHKS 295
+RR L++LC K+ RHK+
Sbjct: 38 VRRKGRLYVLCKKHPRHKT 56
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 165 DNCHTRCHFYPPDV 206
DNC R H +PPD+
Sbjct: 128 DNCLWRLHKFPPDI 141
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 173 TVVNSPKQKDELIIEGNSLEDVPSSAALIQQSTTVKN 63
+V+N K EL +EG L+ V ++ ++ T+ +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 310 STAQILSFSLVPNSARGSPLRETQLLRSVTSL 215
STA+ +SF+ P S P+ E LL ++T L
Sbjct: 274 STAKSISFNPFPVSFLNDPIPEEILLAAMTRL 305
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 100 ELGTSSNEFPSMISSSFCLGELTTVTPGAI 189
EL TS+ PS S CL E+ T+ PG +
Sbjct: 654 ELLTSTFLSPSA-ESQVCLAEIKTIRPGLV 682
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,722
Number of Sequences: 5004
Number of extensions: 38731
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -