Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M09
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 98 3e-21
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 98 3e-21
04_04_0740 - 27699609-27699761,27699864-27700004,27700094-277001... 30 0.78
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656... 30 1.0
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 4.2
02_05_0172 + 26460884-26461084,26461168-26461391,26461726-264617... 27 5.5
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 27 7.3
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 27 7.3
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 27 7.3
03_02_0134 + 5820068-5820178,5822439-5822508,5822893-5822939,582... 27 7.3
07_03_0483 - 18605176-18606118,18606353-18606482,18606609-18606738 27 9.6
02_01_0679 - 5048653-5051394 27 9.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 9.6
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 27 9.6
>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
Length = 190
Score = 98.3 bits (234), Expect = 3e-21
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = -1
Query: 254 TEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQST 75
T NT IEIRNFLGEK +R+V M GVT++ S K KDEL+++GN +E V SAALI Q
Sbjct: 105 TNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKC 164
Query: 74 TVKNKDIRKFLDGL 33
VKNKDIRKFLDG+
Sbjct: 165 HVKNKDIRKFLDGI 178
>02_01_0029 -
176002-176137,176495-176646,177166-177577,178010-178126,
178260-178322,178964-179167,180605-180687,182394-182516,
182987-183328
Length = 543
Score = 98.3 bits (234), Expect = 3e-21
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = -1
Query: 254 TEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQST 75
T NT IEIRNFLGEK +R+V M GVT++ S K KDEL+++GN +E V SAALI Q
Sbjct: 98 TNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKC 157
Query: 74 TVKNKDIRKFLDGL 33
VKNKDIRKFLDG+
Sbjct: 158 HVKNKDIRKFLDGI 171
>04_04_0740 -
27699609-27699761,27699864-27700004,27700094-27700171,
27700298-27700399,27700492-27700548,27700690-27700788,
27700896-27700967,27701062-27701202,27701281-27701413,
27701623-27701690,27701770-27701775
Length = 349
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 290 FQPRAEFGTRVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELI--IEGNSL 117
FQP EF T +T ++IE+ + + K V N K+ +L+ + N L
Sbjct: 180 FQPANEFLTMITEVSKSLIEVTKAIKGATVENNKFCVSVHYRNVDKKNWKLVAQVVNNVL 239
Query: 116 EDVPS 102
+D PS
Sbjct: 240 KDFPS 244
>08_01_0727 +
6567935-6568112,6568197-6568912,6569061-6569162,
6569236-6569547,6569862-6570299
Length = 581
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -1
Query: 209 KYIRRVKMAPGVTVVNSPKQKDELIIEGNSLED----VPSSAALIQQSTTVKNKDIRKFL 42
K RV +PGV+ + SP L E N ++ + S A I + + +R L
Sbjct: 289 KTAARVFGSPGVSNLVSPAGSSSLFTELNKFDEGCTAIKSLAVRILAAHCSTERTMRARL 348
Query: 41 DGLISHLLQQ 12
DGL + LLQQ
Sbjct: 349 DGLKNRLLQQ 358
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = -3
Query: 99 SCPDPTINDSKEQGYQKVLGRSYISSATT 13
SC P D K GYQ VL SYIS+A T
Sbjct: 2982 SCKVPNTKDLKLDGYQDVL-CSYISNAHT 3009
>02_05_0172 +
26460884-26461084,26461168-26461391,26461726-26461756,
26462247-26462834
Length = 347
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 37 PSKNFLISLFFTVVDCWIRAAEL-GTSSNEFPSMISSSFC 153
P +NF ++ FF + + A + G+S N+ P+ +C
Sbjct: 140 PERNFALTFFFVNIQSMVTKATMKGSSGNQSPTTSLLKYC 179
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 43 KNFLISLFFTVVDCWIRAAELGTS 114
++++I LFF CW + EL TS
Sbjct: 154 RDYIIFLFFLATMCWYQGIELWTS 177
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = -1
Query: 158 PKQKDELIIEGNSLEDVPSSAALIQQSTTVKNKDIRKFLDGLIS 27
P ++ EL+ ++ +++ L+Q + ++D+R+ GL+S
Sbjct: 399 PDEQVELLSSSRAITTTTTTSLLLQNGGQLSSEDVRRLAAGLLS 442
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 443 YHLTRRRDYRFFRKYITAVPELL 375
YHL R DY ++R+++ V ELL
Sbjct: 864 YHLLRLYDYFYYREHLLIVCELL 886
>03_02_0134 +
5820068-5820178,5822439-5822508,5822893-5822939,
5823067-5823175,5823355-5823440,5823768-5823858,
5824204-5824289,5824649-5824762
Length = 237
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -1
Query: 146 DELIIEGNSLEDVPSSAA--LIQQSTTVKNKDIRKFLDG 36
+EL GNS+EDVPSS + +S ++ IR+ +DG
Sbjct: 166 EELQANGNSIEDVPSSICNLVCLKSLSLNGNKIRQ-MDG 203
>07_03_0483 - 18605176-18606118,18606353-18606482,18606609-18606738
Length = 400
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 287 QPRAEFGTRVTTEGNTIIEIRNFLGEKYIRRVKMAPGVT 171
+P + GT E TII++ LG ++ + K PG T
Sbjct: 61 RPDLKRGTFSEQEERTIIDVHRILGNRWAQIAKHLPGRT 99
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 141 FILLFR*IDNCHTRCHFYPPDVLFTKEV 224
F+ L R + NC C +P D +F +E+
Sbjct: 420 FMYLPRHLKNCFLYCSMFPQDYIFKREL 447
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -1
Query: 260 VTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLED 111
++ + TI + NF+ EK+ K+ G +N+ K++ E + N+L+D
Sbjct: 501 ISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEEQEENDKINTLKD 550
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 290 FQPRAEFGTRVTTEGNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDEL 138
F +A RV +G ++E R+ L E++ RVK PG+ + + K EL
Sbjct: 440 FTDQARKRYRVDDDG--LLEERHSLEERHSERVKYFPGIRLRSRNPLKQEL 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,783,329
Number of Sequences: 37544
Number of extensions: 254310
Number of successful extensions: 585
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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