Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M09
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    95   3e-20
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    33   0.076
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    31   0.30 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    31   0.30 
U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical pr...    28   3.8  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = -1

Query: 278 AEFGTRVTTE-GNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPS 102
           A F   VT + GN  +EIRNFLGEK +RRV +  GV    S  QKDE+++EGN ++ V  
Sbjct: 95  AHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQ 154

Query: 101 SAALIQQSTTVKNKDIRKFLDGL 33
           +AA IQQST VK KDIRKFLDG+
Sbjct: 155 AAARIQQSTAVKEKDIRKFLDGI 177


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 33.5 bits (73), Expect = 0.076
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 389 PPLCICGKIYSPVCGSDGKTYEN 457
           PP C C  +  PVCG+D  TY N
Sbjct: 16  PPDCDCPSVIRPVCGTDNVTYNN 38


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +2

Query: 392 PLCICGKI---YSPVCGSDGKTYEN 457
           P C+C      +  VCGSDGKTY N
Sbjct: 461 PKCVCPSCTDEFKEVCGSDGKTYSN 485


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = +2

Query: 392 PLCICGKI---YSPVCGSDGKTYEN 457
           P C+C      +  VCGSDGKTY N
Sbjct: 469 PKCVCPSCTDEFKEVCGSDGKTYSN 493


>U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical
           protein ZK682.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 143 ELIIEGNSLEDVPSSAALIQQSTTVKNKDI 54
           EL +E NSL  +PSS AL+ Q  T+ N ++
Sbjct: 190 ELSLETNSLTSIPSS-ALVNQRNTLTNLNL 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,105
Number of Sequences: 27780
Number of extensions: 222302
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)