Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M09
(458 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 92 2e-19
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 89 1e-18
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 89 1e-18
At3g17750.1 68416.m02265 protein kinase family protein contains ... 28 2.6
At1g66940.2 68414.m07609 protein kinase-related 27 4.6
At1g66940.1 68414.m07608 protein kinase-related 27 4.6
At4g27330.1 68417.m03921 sporocyteless (SPL) identical to sporoc... 27 6.1
At1g73460.1 68414.m08504 protein kinase family protein contains ... 27 6.1
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 27 6.1
At5g63800.1 68418.m08007 glycosyl hydrolase family 35 protein si... 27 8.1
At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/oxyge... 27 8.1
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 91.9 bits (218), Expect = 2e-19
Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = -1
Query: 278 AEFGTRVTTEGNT-IIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPS 102
A F + +GN IEIRNFLGEK +R+V+M GV +V S K KDE+I+EGN +E V
Sbjct: 100 AHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSR 159
Query: 101 SAALIQQSTTVKNKDIRKFLDGL 33
S ALI Q VK KDIRKFLDG+
Sbjct: 160 SCALINQKCHVKKKDIRKFLDGI 182
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 89.4 bits (212), Expect = 1e-18
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = -1
Query: 236 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQSTTVKNKD 57
IEIRNFLGEK +R+V+M GVT+V S K KDE++++GN +E V S ALI Q VK KD
Sbjct: 115 IEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKD 174
Query: 56 IRKFLDGL 33
IRKFLDG+
Sbjct: 175 IRKFLDGI 182
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 89.4 bits (212), Expect = 1e-18
Identities = 42/68 (61%), Positives = 52/68 (76%)
Frame = -1
Query: 236 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVPSSAALIQQSTTVKNKD 57
IEIRNFLGEK +R+V+M GVT+V S K KDE++++GN +E V S ALI Q VK KD
Sbjct: 115 IEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKD 174
Query: 56 IRKFLDGL 33
IRKFLDG+
Sbjct: 175 IRKFLDGI 182
>At3g17750.1 68416.m02265 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 443 YHLTRRRDYRFFRKYITAVPELL 375
YHL R DY +FR+++ V ELL
Sbjct: 887 YHLLRLYDYFYFREHLLIVCELL 909
>At1g66940.2 68414.m07609 protein kinase-related
Length = 309
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 311 INGTNLEFQPRAEFGTRVTTEGNTIIEIRNFLGEKYIRRVKMAPGV 174
+N TNLE R F V NT E + LG ++ + PGV
Sbjct: 184 LNVTNLESVLRKGFEVTVVINENTCQECLSSLGRCHVFNENLTPGV 229
>At1g66940.1 68414.m07608 protein kinase-related
Length = 332
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 311 INGTNLEFQPRAEFGTRVTTEGNTIIEIRNFLGEKYIRRVKMAPGV 174
+N TNLE R F V NT E + LG ++ + PGV
Sbjct: 184 LNVTNLESVLRKGFEVTVVINENTCQECLSSLGRCHVFNENLTPGV 229
>At4g27330.1 68417.m03921 sporocyteless (SPL) identical to
sporocyteless SPL (MADS-box related protein)
[Arabidopsis thaliana] gi|5566240|gb|AAD45344
Length = 314
Score = 27.1 bits (57), Expect = 6.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 412 FSANT*RRCQSCYRVYKRSGDQKN 341
F+A++ RC +C++ + GDQ N
Sbjct: 164 FNASSNNRCDTCFKKKRLDGDQNN 187
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 443 YHLTRRRDYRFFRKYITAVPELL 375
YHL R DY ++R+++ V ELL
Sbjct: 918 YHLLRLYDYFYYREHLLIVCELL 940
>At1g73450.1 68414.m08503 protein kinase, putative similar to
nuclear serine/threonine protein kinase GI:3582644 from
[Rattus norvegicus]
Length = 1152
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 443 YHLTRRRDYRFFRKYITAVPELL 375
YHL R DY ++R+++ V ELL
Sbjct: 901 YHLLRLYDYFYYREHLLIVCELL 923
>At5g63800.1 68418.m08007 glycosyl hydrolase family 35 protein
similar to beta-galactosidase GI:7939621 from
[Lycopersicon esculentum]; contains Pfam profile
PF01301: Glycosyl hydrolases family 35
Length = 718
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 335 VYSFCVLNINGTNLEFQPRAEFGTRVTTEGNTII 234
V+ C++ I GT LEF A VT +G ++I
Sbjct: 7 VFGLCLILIVGTFLEFSGGATAAKGVTYDGRSLI 40
>At1g73110.1 68414.m08453 ribulose bisphosphate
carboxylase/oxygenase activase, putative / RuBisCO
activase, putative similar to ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA) [Oryza sativa] SWISS-PROT:P93431
Length = 432
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 180 WCDSCQFT*TKG*TDHRRKLIRRCTQFSCPDPTINDSKEQGYQKV 46
W D T G RRK + QF+ P+ T+ E GY +
Sbjct: 367 WVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLI 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,702
Number of Sequences: 28952
Number of extensions: 203974
Number of successful extensions: 533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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