Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M07
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    89   3e-19
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    57   1e-09
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   2.1  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    26   2.8  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   2.8  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    26   3.7  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    26   3.7  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   3.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   6.4  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   6.4  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.4  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    25   8.4  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 89.4 bits (212), Expect = 3e-19
 Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
 Frame = +3

Query: 3   ETFESYFIMWRLTKQQRYRDWGWEAVQALEKHCRVDG--GYTGIANVYHQNPQGD-DVQQ 173
           ET ES FI++R+T+ + YR+WGW    +  ++ R+ G   +T + +V  +  +   D  +
Sbjct: 414 ETVESLFILYRITRDEIYREWGWNIFVSFLRYSRLPGRDAFTCLDSVESKKVKDQRDKTE 473

Query: 174 SFFLAETLKYLYLLFSDD-TLVPLDEWVFNTEAHPLP 281
           SF+ AETLKYLYLLF DD +++PL  + FNTEAHP P
Sbjct: 474 SFWFAETLKYLYLLFEDDFSILPLTNYTFNTEAHPFP 510


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
 Frame = +3

Query: 3   ETFESYFIMWRLTKQQRYRDWGWEAVQALEKHCRVDGGYTGIANVYHQNPQGDDVQQSFF 182
           E  ES + ++R TK   Y   G   +  +E H     G+  + N+  +     +  +SFF
Sbjct: 384 EFAESTYYLYRATKDVFYLHVGELLLSNIENHLWTPCGFAAVENL--EKYTLSNRMESFF 441

Query: 183 LAETLKYLYLLFSDDTLVPLD--EWVFNTEAHPLPIKGQ 293
           L+ETLKYL+LLF DD  +     +++F TE H  P+  Q
Sbjct: 442 LSETLKYLFLLFDDDNPIHRSHHDFIFTTEGHLFPVTNQ 480


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 424 VEHIKLQSWSSLFSVEWXTRKVHSL 350
           +EH +L+SW   +SV + T K+ SL
Sbjct: 270 LEHFELRSWRECWSVFYETLKILSL 294


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 147 SDGRRLRYPCTRRPLDNASPMPEQPP 70
           SDG  L+ P T  PL  A P+P+  P
Sbjct: 64  SDGVLLQLPETVTPLPRAKPLPKPKP 89


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
 Frame = +1

Query: 55  TATGAGRLFR----HWRSIVEW 108
           T  G GRL R    HWR I++W
Sbjct: 378 TRLGCGRLVRELGPHWRDIIDW 399


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -2

Query: 394 SLFSVEWXTRKVHSLFS---LSAELRTSFLSALRYSG 293
           +L+S+EW  ++VH   S    SA+L T+   + ++SG
Sbjct: 265 ALYSIEWAIQRVHKKSSDPYKSAQLFTALGHSSKFSG 301


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +2

Query: 32  ASDQTAALPRLGLGGCSGIGEALSSGRR 115
           AS  T      G GG SGIG   SSGRR
Sbjct: 160 ASSTTFGAQNFGAGGASGIG---SSGRR 184


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 40  PNSSATATGAGRLFRHWRSIVEWTAGTRVSQTSTIRTL 153
           P   A ATG   LFR   S++    G  +SQT+T+  L
Sbjct: 418 PEEQAVATGLSYLFRATGSVI----GISLSQTTTLSIL 451


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 283 SKGNRYTVALTRKTFSTPQTMKT 351
           +K  R++  LT KTF+TPQ + T
Sbjct: 613 NKDFRHSFLLTYKTFTTPQELFT 635


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 487 LIISCIEDKRSSEYTFIICCRVEHIK 410
           L + CIE+ +S +   II C+V+ +K
Sbjct: 243 LTLLCIEEPKSQDAEDIIKCKVDFLK 268


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 108 PLDNASPMPEQPPSPSRGSAAVWSDAT 28
           PL N +P P   P+PS  S A  + +T
Sbjct: 366 PLQNTNPAPSTFPNPSVASPAFPNSST 392


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +3

Query: 117 YTGIANVYHQNPQGDDVQQSFFLAETLKYLYLLFSDDTLVPLDEWVFN 260
           Y     + HQ       Q SF +    KY+Y  ++D       E +FN
Sbjct: 63  YNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFN 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,536
Number of Sequences: 5004
Number of extensions: 41135
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)