Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M07
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7286| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0.4)            119   1e-27
SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_24588| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   1e-04
SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)               28   3.8  
SB_8761| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)                  28   5.0  
SB_27611| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_7286| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0.4)
          Length = 107

 Score =  119 bits (287), Expect = 1e-27
 Identities = 56/95 (58%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
 Frame = +3

Query: 3   ETFESYFIMWRLTKQQRYRDWGWEAVQALEKHCRV-DGGYTGIANVYHQNPQGDDVQQSF 179
           ET ES +I++RLTK ++Y+++GWE  QA EKH R+  GGY+ I +V   N    D  +SF
Sbjct: 11  ETVESLYILYRLTKDKKYQEYGWEIFQAFEKHTRIASGGYSSINSVRQLNHGYRDKMESF 70

Query: 180 FLAETLKYLYLLFSDDTLVPLDEWVFNTEAHPLPI 284
           FL ETLKYL+LLFSD  +VPLD++VFNTEAHPLPI
Sbjct: 71  FLGETLKYLFLLFSDLDVVPLDKFVFNTEAHPLPI 105


>SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   ETFESYFIMWRLTKQQRYRDWGWEAVQALEK 95
           E  E +F MWR T+  +YRDW WEA Q   K
Sbjct: 520 EVIEGWFYMWRFTRDSKYRDWAWEAAQVSTK 550


>SB_24588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +3

Query: 144 QNPQGDDVQQSFFLAETLKYLYLLFSDDTLV 236
           Q  + DD  +SFFLAET+KYLYLLF  D ++
Sbjct: 5   QTHERDDRMESFFLAETIKYLYLLFDHDNMI 35


>SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  FIMWRLTKQQRYRDWGWEAVQALEKHCRVD 110
           FI+  LT  +R  D+ WEAV+ ++  C+ D
Sbjct: 639 FIIIVLTISRRLDDYSWEAVRHIDMKCKCD 668


>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 33  RLTKQQRYRDWGWEAVQALEKHC--RVDGGYTGIANVY-HQNPQGDDVQQSFFLAETLK 200
           ++T+   ++ WGWE ++ +E      V G Y+ I N Y +Q  +G+      F A   K
Sbjct: 489 KVTESISWKGWGWEGMETMEGAIPGAVRGWYSEIKNDYNYQTGKGNGKAVGHFQAVVWK 547


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 186 QGRSSVERHHLEGSDGRRLRYPCTRRPLDNASPMPEQPPSPSRGS 52
           +GR   ER    G  GR  RY   + P  +  P P  PP P R +
Sbjct: 675 RGRDRPERPDRTGERGREPRYSTPQGPDYHRRPSP-SPPGPPRNA 718


>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
          Length = 86

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 117 TRRPLDNASPMPEQPPSP 64
           T+RP+D A+P P QP  P
Sbjct: 11  TKRPVDQATPKPPQPTPP 28


>SB_8761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 237 PLDEWVFNTEAHPLPIKGQPLYRSADKKDVLNSADNENKL*TFLVSHSTL 386
           PL+E   +   HPL +K +    + D K  +N  +++ KL   L  H+ L
Sbjct: 137 PLNETCTSKSVHPLTMKERKAEETIDIKCEVNENEDDPKLNPTLTCHARL 186


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 108  PLDNASPMPEQPPSPSR 58
            P   ASPMP +PP+P+R
Sbjct: 1036 PHRGASPMPHEPPTPTR 1052


>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
          Length = 682

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 108 PLDNASPMPEQPPSPSR 58
           P   ASPMP +PP+P+R
Sbjct: 169 PHRGASPMPHEPPTPTR 185


>SB_27611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 413 KTSELVFIV*CGVGXKKSSQFVFIVCG 333
           K  E+VFI  CG G ++    VFI CG
Sbjct: 218 KRKEVVFIA-CGGGREEKGSRVFIACG 243


>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 161 ITLRVLMVDVCDTRVPAVHSTMLLQCLNSLPAPVAVALLFGQTPHY 24
           IT  +L+   C  R PA+  T+LLQ       P     L  QTP Y
Sbjct: 308 ITDTLLLQTPCYYRHPAITDTLLLQTSRYYRHPAITDTLLLQTPCY 353


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = -3

Query: 252 PTRQGERGCRPRIGDIST*AFRQGRSSVERHHLEGSDGRRLRYPCT--RRPLDNASPMPE 79
           P R G+ G  P     S         S +R   EG  G  + +P     RP DN +P P 
Sbjct: 413 PPRHGQDGGHPSQQPRSAWGDPPSHPSFDR---EGQRGASMGHPIPPQTRPFDNRAPPPT 469

Query: 78  QPPSPS 61
           Q   PS
Sbjct: 470 QGYGPS 475


>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 483 LSVVLKTREVQSTLSLFV-VELNT*NFRVGLHCL 385
           L ++LKT+ V+   S ++ V L   +F VGLHCL
Sbjct: 44  LVILLKTKSVRRRRSNYLLVNLCIADFLVGLHCL 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,544,604
Number of Sequences: 59808
Number of extensions: 318383
Number of successful extensions: 951
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)